KEGG   PATHWAY: cmo00020
Entry
cmo00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Cucumis melo (muskmelon)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
cmo00020  Citrate cycle (TCA cycle)
cmo00020

Module
cmo_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:cmo00020]
cmo_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:cmo00020]
cmo_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:cmo00020]
Other DBs
GO: 0006099
Organism
Cucumis melo (muskmelon) [GN:cmo]
Gene
103499882  citrate synthase, mitochondrial [KO:K01647] [EC:2.3.3.1]
103496336  citrate synthase, glyoxysomal [KO:K01647] [EC:2.3.3.1]
103492099  ATP-citrate synthase alpha chain protein 2 isoform X1 [KO:K01648] [EC:2.3.3.8]
103488518  ATP-citrate synthase beta chain protein 2-like [KO:K01648] [EC:2.3.3.8]
103487704  ATP-citrate synthase alpha chain protein 1 [KO:K01648] [EC:2.3.3.8]
103497789  ATP-citrate synthase beta chain protein 2 [KO:K01648] [EC:2.3.3.8]
103495599  aconitate hydratase, cytoplasmic [KO:K01681] [EC:4.2.1.3]
103485166  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
103501355  isocitrate dehydrogenase [NADP] isoform X1 [KO:K00031] [EC:1.1.1.42]
103498090  isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
103490459  isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial-like [KO:K00030] [EC:1.1.1.41]
103491169  isocitrate dehydrogenase [NAD] catalytic subunit 5, mitochondrial [KO:K00030] [EC:1.1.1.41]
103485186  isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial isoform X1 [KO:K00030] [EC:1.1.1.41]
103501642  uncharacterized protein LOC103501642 [KO:K00164] [EC:1.2.4.2]
103500204  uncharacterized protein LOC103500204 [KO:K00164] [EC:1.2.4.2]
103490134  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 1, mitochondrial [KO:K00658] [EC:2.3.1.61]
103483908  leghemoglobin reductase [KO:K00382] [EC:1.8.1.4]
103497765  dihydrolipoyl dehydrogenase, mitochondrial isoform X1 [KO:K00382] [EC:1.8.1.4]
103497796  dihydrolipoyl dehydrogenase 1, chloroplastic-like [KO:K00382] [EC:1.8.1.4]
103504689  succinate--CoA ligase [ADP-forming] subunit alpha, mitochondrial [KO:K01899] [EC:6.2.1.4 6.2.1.5]
103498914  succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
103494381  succinate dehydrogenase [ubiquinone] flavoprotein subunit 1, mitochondrial [KO:K00234] [EC:1.3.5.1]
103491745  succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial [KO:K00235] [EC:1.3.5.1]
103494867  succinate dehydrogenase [ubiquinone] iron-sulfur subunit 3, mitochondrial [KO:K00235] [EC:1.3.5.1]
103494868  succinate dehydrogenase [ubiquinone] iron-sulfur subunit 3, mitochondrial-like [KO:K00235] [EC:1.3.5.1]
103494751  fumarate hydratase 1, mitochondrial [KO:K01679] [EC:4.2.1.2]
103483128  malate dehydrogenase, cytoplasmic-like isoform X1 [KO:K00025] [EC:1.1.1.37]
103499421  malate dehydrogenase, cytoplasmic [KO:K00025] [EC:1.1.1.37]
103492923  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
103484892  malate dehydrogenase, glyoxysomal isoform X1 [KO:K00026] [EC:1.1.1.37]
103494326  malate dehydrogenase, chloroplastic isoform X1 [KO:K00026] [EC:1.1.1.37]
103492856  malate dehydrogenase, chloroplastic-like [KO:K00026] [EC:1.1.1.37]
103503632  phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
103484904  phosphoenolpyruvate carboxykinase (ATP) 1-like [KO:K01610] [EC:4.1.1.49]
103495751  phosphoenolpyruvate carboxykinase (ATP) 1-like [KO:K01610] [EC:4.1.1.49]
103496415  pyruvate dehydrogenase E1 component subunit alpha-1, mitochondrial-like [KO:K00161] [EC:1.2.4.1]
103489051  pyruvate dehydrogenase E1 component subunit alpha, mitochondrial [KO:K00161] [EC:1.2.4.1]
103498837  pyruvate dehydrogenase E1 component subunit alpha-3, chloroplastic [KO:K00161] [EC:1.2.4.1]
103487742  pyruvate dehydrogenase E1 component subunit beta-3, chloroplastic-like [KO:K00162] [EC:1.2.4.1]
103498877  pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial isoform X1 [KO:K00162] [EC:1.2.4.1]
103489270  dihydrolipoyllysine-residue acetyltransferase component 4 of pyruvate dehydrogenase complex, chloroplastic [KO:K00627] [EC:2.3.1.12]
103500056  dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex, chloroplastic [KO:K00627] [EC:2.3.1.12]
103496483  dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex, mitochondrial isoform X1 [KO:K00627] [EC:2.3.1.12]
103490036  dihydrolipoyllysine-residue acetyltransferase component 3 of pyruvate dehydrogenase complex, mitochondrial isoform X1 [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
cmo00010  Glycolysis / Gluconeogenesis
cmo00053  Ascorbate and aldarate metabolism
cmo00061  Fatty acid biosynthesis
cmo00062  Fatty acid elongation
cmo00071  Fatty acid degradation
cmo00190  Oxidative phosphorylation
cmo00220  Arginine biosynthesis
cmo00250  Alanine, aspartate and glutamate metabolism
cmo00280  Valine, leucine and isoleucine degradation
cmo00350  Tyrosine metabolism
cmo00470  D-Amino acid metabolism
cmo00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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