KEGG   PATHWAY: cmur00020
Entry
cmur00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Chlamydia muridarum Nigg CM972
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
cmur00020  Citrate cycle (TCA cycle)
cmur00020

Module
cmur_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:cmur00020]
cmur_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:cmur00020]
Other DBs
GO: 0006099
Organism
Chlamydia muridarum Nigg CM972 [GN:cmur]
Gene
Y015_01700  MFS transporter [KO:K00164] [EC:1.2.4.2]
Y015_03575  branched-chain alpha-keto acid dehydrogenase subunit E2 [KO:K00658] [EC:2.3.1.61]
Y015_01705  2-oxoglutarate dehydrogenase E2 [KO:K00658] [EC:2.3.1.61]
Y015_04485  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Y015_01100  succinyl-CoA synthetase subunit alpha [KO:K01902] [EC:6.2.1.5]
Y015_01095  sucC; malate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
Y015_04670  succinate dehydrogenase [KO:K00239] [EC:1.3.5.1]
Y015_04665  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
Y015_04675  succinate dehydrogenase [KO:K00241]
Y015_01285  fumC; fumarate hydratase [KO:K01679] [EC:4.2.1.2]
Y015_03440  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
Y015_00445  phosphoenolpyruvate carboxykinase [KO:K01596] [EC:4.1.1.32]
Y015_02730  pyruvate dehydrogenase [KO:K00161] [EC:1.2.4.1]
Y015_02735  pyruvate dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
Y015_02740  branched-chain alpha-keto acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
cmur00010  Glycolysis / Gluconeogenesis
cmur00061  Fatty acid biosynthesis
cmur00190  Oxidative phosphorylation
cmur00250  Alanine, aspartate and glutamate metabolism
cmur00280  Valine, leucine and isoleucine degradation
cmur00470  D-Amino acid metabolism
cmur00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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