KEGG   PATHWAY: cmv00020
Entry
cmv00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Corynebacterium mustelae
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
cmv00020  Citrate cycle (TCA cycle)
cmv00020

Module
cmv_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:cmv00020]
cmv_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:cmv00020]
cmv_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:cmv00020]
cmv_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:cmv00020]
cmv_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:cmv00020]
Other DBs
GO: 0006099
Organism
Corynebacterium mustelae [GN:cmv]
Gene
CMUST_04720  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
CMUST_08280  acn; aconitate hydratase 1 [KO:K27802] [EC:4.2.1.3 4.2.1.99]
CMUST_03240  icd; isocitrate dehydrogenase, NADP-dependent, monomeric type [KO:K00031] [EC:1.1.1.42]
CMUST_06145  odhA; 2-oxoglutarate dehydrogenase E1 component [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
CMUST_01415  lpd; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
CMUST_12890  cat1; succinate CoA transferase [KO:K18118] [EC:2.8.3.18]
CMUST_01450  sdhA; succinate dehydrogenase subunit A [KO:K00239] [EC:1.3.5.1]
CMUST_01455  succinate dehydrogenase and fumarate reductase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
CMUST_01445  sdhB; succinate dehydrogenase/fumarate reductase cytochrome b subunit, b558 family [KO:K00241]
CMUST_05620  fumC; fumarase, class II [KO:K01679] [EC:4.2.1.2]
CMUST_12145  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
CMUST_09425  mqo; malate:quinone-oxidoreductase [KO:K00116] [EC:1.1.5.4]
CMUST_03410  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
CMUST_14070  pckG; phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
CMUST_11330  aceE; pyruvate dehydrogenase E1 component, homodimeric type [KO:K00163] [EC:1.2.4.1]
CMUST_11075  aceF; 2-oxoglutarate dehydrogenase E2 component [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
cmv00010  Glycolysis / Gluconeogenesis
cmv00053  Ascorbate and aldarate metabolism
cmv00061  Fatty acid biosynthesis
cmv00071  Fatty acid degradation
cmv00190  Oxidative phosphorylation
cmv00220  Arginine biosynthesis
cmv00250  Alanine, aspartate and glutamate metabolism
cmv00280  Valine, leucine and isoleucine degradation
cmv00350  Tyrosine metabolism
cmv00470  D-Amino acid metabolism
cmv00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

DBGET integrated database retrieval system