KEGG   PATHWAY: cna00020
Entry
cna00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Croceicoccus naphthovorans
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
cna00020  Citrate cycle (TCA cycle)
cna00020

Module
cna_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:cna00020]
cna_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:cna00020]
cna_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:cna00020]
cna_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:cna00020]
cna_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:cna00020]
Other DBs
GO: 0006099
Organism
Croceicoccus naphthovorans [GN:cna]
Gene
AB433_08175  gltA; type II citrate synthase [KO:K01647] [EC:2.3.3.1]
AB433_16670  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
AB433_06125  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
AB433_05915  sucA; 2-oxoglutarate dehydrogenase [KO:K00164] [EC:1.2.4.2]
AB433_05910  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
AB433_08620  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
AB433_05905  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
AB433_11605  2-oxoglutarate ferredoxin oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
AB433_11600  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
AB433_05920  succinate--CoA ligase [KO:K01902] [EC:6.2.1.5]
AB433_01405  sucC; succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
AB433_11690  fumarate reductase [KO:K00239] [EC:1.3.5.1]
AB433_07935  succinate dehydrogenase [KO:K00240] [EC:1.3.5.1]
AB433_11700  succinate dehydrogenase [KO:K00241]
AB433_11695  succinate dehydrogenase [KO:K00242]
AB433_16580  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
AB433_09100  fumarate hydratase [KO:K01679] [EC:4.2.1.2]
AB433_05925  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
AB433_03565  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
AB433_02715  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
AB433_08370  pyruvate dehydrogenase [KO:K00161] [EC:1.2.4.1]
AB433_08375  pyruvate dehydrogenase [KO:K00162] [EC:1.2.4.1]
AB433_08610  branched-chain alpha-keto acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
cna00010  Glycolysis / Gluconeogenesis
cna00053  Ascorbate and aldarate metabolism
cna00061  Fatty acid biosynthesis
cna00071  Fatty acid degradation
cna00190  Oxidative phosphorylation
cna00220  Arginine biosynthesis
cna00250  Alanine, aspartate and glutamate metabolism
cna00280  Valine, leucine and isoleucine degradation
cna00350  Tyrosine metabolism
cna00470  D-Amino acid metabolism
cna00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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