KEGG   PATHWAY: cnr00020
Entry
cnr00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Cloacibacterium normanense
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
cnr00020  Citrate cycle (TCA cycle)
cnr00020

Module
cnr_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:cnr00020]
cnr_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:cnr00020]
cnr_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:cnr00020]
Other DBs
GO: 0006099
Organism
Cloacibacterium normanense [GN:cnr]
Gene
EB819_12675  citrate synthase [KO:K01647] [EC:2.3.3.1]
EB819_10105  aconitate hydratase [KO:K27802] [EC:4.2.1.3 4.2.1.99]
EB819_10100  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
EB819_03670  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
EB819_02820  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
EB819_02830  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
EB819_06360  2-oxo acid dehydrogenase subunit E2 [KO:K00658] [EC:2.3.1.61]
EB819_04625  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
EB819_05345  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
EB819_06945  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
EB819_00610  ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
EB819_09235  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
EB819_09245  succinate dehydrogenase cytochrome b subunit [KO:K00241]
EB819_10355  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
EB819_08160  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
EB819_12360  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
EB819_04395  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
EB819_08870  pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
EB819_04400  pyruvate dehydrogenase [KO:K00627] [EC:2.3.1.12]
EB819_07305  nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
cnr00010  Glycolysis / Gluconeogenesis
cnr00053  Ascorbate and aldarate metabolism
cnr00061  Fatty acid biosynthesis
cnr00071  Fatty acid degradation
cnr00190  Oxidative phosphorylation
cnr00220  Arginine biosynthesis
cnr00250  Alanine, aspartate and glutamate metabolism
cnr00280  Valine, leucine and isoleucine degradation
cnr00350  Tyrosine metabolism
cnr00470  D-Amino acid metabolism
cnr00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

DBGET integrated database retrieval system