KEGG   PATHWAY: comn00020
Entry
comn00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Cellulophaga omnivescoria
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
comn00020  Citrate cycle (TCA cycle)
comn00020

Module
comn_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:comn00020]
comn_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:comn00020]
comn_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:comn00020]
comn_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:comn00020]
comn_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:comn00020]
Other DBs
GO: 0006099
Organism
Cellulophaga omnivescoria [GN:comn]
Gene
PBN93_10790  citrate synthase [KO:K01647] [EC:2.3.3.1]
PBN93_02355  aconitate hydratase [KO:K27802] [EC:4.2.1.3 4.2.1.99]
PBN93_00075  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
PBN93_09010  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
PBN93_02455  dihydrolipoamide acetyltransferase family protein [KO:K00658] [EC:2.3.1.61]
PBN93_09015  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
PBN93_00945  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
PBN93_15145  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
PBN93_14845  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
PBN93_00500  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
PBN93_06950  fumarate reductase/succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
PBN93_06955  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
PBN93_06945  succinate dehydrogenase cytochrome b subunit [KO:K00241]
PBN93_13545  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
PBN93_11415  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
PBN93_05435  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
PBN93_02800  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
PBN93_04565  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
PBN93_10295  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
PBN93_09715  pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
PBN93_10300  2-oxo acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
comn00010  Glycolysis / Gluconeogenesis
comn00053  Ascorbate and aldarate metabolism
comn00061  Fatty acid biosynthesis
comn00071  Fatty acid degradation
comn00190  Oxidative phosphorylation
comn00220  Arginine biosynthesis
comn00250  Alanine, aspartate and glutamate metabolism
comn00280  Valine, leucine and isoleucine degradation
comn00350  Tyrosine metabolism
comn00470  D-Amino acid metabolism
comn00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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