KEGG   PATHWAY: corz00020
Entry
corz00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Chryseobacterium oryzae
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
corz00020  Citrate cycle (TCA cycle)
corz00020

Module
corz_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:corz00020]
corz_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:corz00020]
corz_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:corz00020]
corz_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:corz00020]
corz_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:corz00020]
Other DBs
GO: 0006099
Organism
Chryseobacterium oryzae [GN:corz]
Gene
MTP08_01485  citrate synthase [KO:K01647] [EC:2.3.3.1]
MTP08_13115  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
MTP08_13110  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
MTP08_04955  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
MTP08_05355  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
MTP08_03460  2-oxo acid dehydrogenase subunit E2 [KO:K00658] [EC:2.3.1.61]
MTP08_05360  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
MTP08_08275  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
MTP08_08900  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
MTP08_02865  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
MTP08_02445  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
MTP08_10920  fumarate reductase/succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
MTP08_11695  fumarate reductase/succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
MTP08_10915  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
MTP08_11690  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
MTP08_11700  succinate dehydrogenase cytochrome b subunit [KO:K00241]
MTP08_10925  succinate dehydrogenase cytochrome b subunit [KO:K00241]
MTP08_00235  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
MTP08_00240  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
MTP08_09040  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
MTP08_11810  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
MTP08_00950  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
MTP08_05850  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
MTP08_11085  pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
MTP08_05855  2-oxo acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
corz00010  Glycolysis / Gluconeogenesis
corz00053  Ascorbate and aldarate metabolism
corz00061  Fatty acid biosynthesis
corz00071  Fatty acid degradation
corz00190  Oxidative phosphorylation
corz00220  Arginine biosynthesis
corz00250  Alanine, aspartate and glutamate metabolism
corz00280  Valine, leucine and isoleucine degradation
corz00350  Tyrosine metabolism
corz00470  D-Amino acid metabolism
corz00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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