KEGG   PATHWAY: cpap00020
Entry
cpap00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Carica papaya (papaya)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
cpap00020  Citrate cycle (TCA cycle)
cpap00020

Module
cpap_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:cpap00020]
cpap_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:cpap00020]
cpap_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:cpap00020]
cpap_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:cpap00020]
cpap_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:cpap00020]
Other DBs
GO: 0006099
Organism
Carica papaya (papaya) [GN:cpap]
Gene
110806978  citrate synthase, mitochondrial [KO:K01647] [EC:2.3.3.1]
110815011  citrate synthase 2, peroxisomal-like [KO:K01647] [EC:2.3.3.1]
110821399  ATP-citrate synthase beta chain protein 2 [KO:K01648] [EC:2.3.3.8]
110815486  LOW QUALITY PROTEIN: ATP-citrate synthase alpha chain protein 2 [KO:K01648] [EC:2.3.3.8]
110813111  ATP-citrate synthase alpha chain protein 1 [KO:K01648] [EC:2.3.3.8]
110811504  aconitate hydratase, cytoplasmic [KO:K01681] [EC:4.2.1.3]
110820756  aconitate hydratase 3, mitochondrial-like [KO:K01681] [EC:4.2.1.3]
110822198  LOW QUALITY PROTEIN: aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
110807293  isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
110809613  LOW QUALITY PROTEIN: isocitrate dehydrogenase [NADP]-like [KO:K00031] [EC:1.1.1.42]
110810245  isocitrate dehydrogenase [NADP], chloroplastic/mitochondrial [KO:K00031] [EC:1.1.1.42]
110811209  isocitrate dehydrogenase [NAD] catalytic subunit 5, mitochondrial [KO:K00030] [EC:1.1.1.41]
110818925  isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial [KO:K00030] [EC:1.1.1.41]
110807749  2-oxoglutarate dehydrogenase, mitochondrial-like [KO:K00164] [EC:1.2.4.2]
110812305  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, mitochondrial [KO:K00658] [EC:2.3.1.61]
110815252  dihydrolipoyl dehydrogenase 1, chloroplastic-like [KO:K00382] [EC:1.8.1.4]
110808357  dihydrolipoyl dehydrogenase 1, mitochondrial [KO:K00382] [EC:1.8.1.4]
110824330  succinate--CoA ligase [ADP-forming] subunit alpha, mitochondrial isoform X1 [KO:K01899] [EC:6.2.1.4 6.2.1.5]
110807667  succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
110822288  succinate dehydrogenase [ubiquinone] flavoprotein subunit 1, mitochondrial [KO:K00234] [EC:1.3.5.1]
110826080  succinate dehydrogenase [ubiquinone] iron-sulfur subunit 3, mitochondrial [KO:K00235] [EC:1.3.5.1]
110809007  succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial [KO:K00235] [EC:1.3.5.1]
7441433  sdh3; succinate dehydrogenase subunit 3 [KO:K00236]
7441405  sdh4; succinate dehydrogenase subunit 4 [KO:K25801]
110817866  fumarate hydratase 1, mitochondrial-like [KO:K01679] [EC:4.2.1.2]
110808104  fumarate hydratase 1, mitochondrial [KO:K01679] [EC:4.2.1.2]
110815859  malate dehydrogenase [KO:K00025] [EC:1.1.1.37]
110823592  malate dehydrogenase, chloroplastic [KO:K00026] [EC:1.1.1.37]
110809086  malate dehydrogenase, glyoxysomal isoform X1 [KO:K00026] [EC:1.1.1.37]
110808921  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
110818995  LOW QUALITY PROTEIN: malate dehydrogenase, glyoxysomal [KO:K00026] [EC:1.1.1.37]
110807858  phosphoenolpyruvate carboxykinase (ATP)-like [KO:K01610] [EC:4.1.1.49]
110809076  phosphoenolpyruvate carboxykinase (ATP)-like [KO:K01610] [EC:4.1.1.49]
110822713  pyruvate dehydrogenase E1 component subunit alpha-2, mitochondrial [KO:K00161] [EC:1.2.4.1]
110806882  pyruvate dehydrogenase E1 component subunit alpha-3, chloroplastic [KO:K00161] [EC:1.2.4.1]
110823011  pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial isoform X1 [KO:K00162] [EC:1.2.4.1]
110826317  pyruvate dehydrogenase E1 component subunit beta-3, chloroplastic-like [KO:K00162] [EC:1.2.4.1]
110813323  dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex, chloroplastic [KO:K00627] [EC:2.3.1.12]
110823275  LOW QUALITY PROTEIN: dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex, mitochondrial-like [KO:K00627] [EC:2.3.1.12]
110809184  dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex, mitochondrial isoform X1 [KO:K00627] [EC:2.3.1.12]
110810411  dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex, mitochondrial-like isoform X1 [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
cpap00010  Glycolysis / Gluconeogenesis
cpap00053  Ascorbate and aldarate metabolism
cpap00061  Fatty acid biosynthesis
cpap00062  Fatty acid elongation
cpap00071  Fatty acid degradation
cpap00190  Oxidative phosphorylation
cpap00220  Arginine biosynthesis
cpap00250  Alanine, aspartate and glutamate metabolism
cpap00280  Valine, leucine and isoleucine degradation
cpap00350  Tyrosine metabolism
cpap00470  D-Amino acid metabolism
cpap00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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