KEGG   PATHWAY: cpap00940
Entry
cpap00940                   Pathway                                
Name
Phenylpropanoid biosynthesis - Carica papaya (papaya)
Description
Phenylpropanoids are a group of plant secondary metabolites derived from phenylalanine and having a wide variety of functions both as structural and signaling molecules. Phenylalanine is first converted to cinnamic acid by deamination. It is followed by hydroxylation and frequent methylation to generate coumaric acid and other acids with a phenylpropane (C6-C3) unit. Reduction of the CoA-activated carboxyl groups of these acids results in the corresponding aldehydes and alcohols. The alcohols are called monolignols, the starting compounds for biosynthesis of lignin.
Class
Metabolism; Biosynthesis of other secondary metabolites
Pathway map
cpap00940  Phenylpropanoid biosynthesis
cpap00940

Module
cpap_M00039  Monolignol biosynthesis, phenylalanine/tyrosine => monolignol [PATH:cpap00940]
cpap_M00137  Flavanone biosynthesis, phenylalanine => naringenin [PATH:cpap00940]
Other DBs
GO: 0009699
Organism
Carica papaya (papaya) [GN:cpap]
Gene
110807260  phenylalanine ammonia-lyase [KO:K10775] [EC:4.3.1.24]
110811208  phenylalanine ammonia-lyase 1 [KO:K10775] [EC:4.3.1.24]
110824216  phenylalanine ammonia-lyase 1-like [KO:K10775] [EC:4.3.1.24]
110823746  trans-cinnamate 4-monooxygenase [KO:K00487] [EC:1.14.14.91]
110809815  cytochrome P450 CYP73A100-like [KO:K00487] [EC:1.14.14.91]
110810751  4-coumarate--CoA ligase-like 7 [KO:K01904] [EC:6.2.1.12]
110815942  4-coumarate--CoA ligase-like 1 [KO:K01904] [EC:6.2.1.12]
110826413  4-coumarate--CoA ligase 2-like [KO:K01904] [EC:6.2.1.12]
110807222  4-coumarate--CoA ligase 2-like [KO:K01904] [EC:6.2.1.12]
110811113  4-coumarate--CoA ligase 1-like [KO:K01904] [EC:6.2.1.12]
110813387  4-coumarate--CoA ligase-like 7 isoform X1 [KO:K01904] [EC:6.2.1.12]
110813404  4-coumarate--CoA ligase-like 7 isoform X1 [KO:K01904] [EC:6.2.1.12]
110820565  4-coumarate--CoA ligase-like 9 [KO:K01904] [EC:6.2.1.12]
110816062  4-coumarate--CoA ligase-like 9 [KO:K01904] [EC:6.2.1.12]
110812373  acetyl-CoA-benzylalcohol acetyltransferase-like [KO:K13065] [EC:2.3.1.133]
110815640  shikimate O-hydroxycinnamoyltransferase-like [KO:K13065] [EC:2.3.1.133]
110815641  shikimate O-hydroxycinnamoyltransferase-like [KO:K13065] [EC:2.3.1.133]
110815680  shikimate O-hydroxycinnamoyltransferase-like [KO:K13065] [EC:2.3.1.133]
110815765  shikimate O-hydroxycinnamoyltransferase-like [KO:K13065] [EC:2.3.1.133]
110811058  spermidine hydroxycinnamoyl transferase [KO:K13065] [EC:2.3.1.133]
110821129  LOW QUALITY PROTEIN: shikimate O-hydroxycinnamoyltransferase-like [KO:K13065] [EC:2.3.1.133]
110811301  cytochrome P450 98A2 [KO:K09754] [EC:1.14.14.96]
110821220  caffeoylshikimate esterase isoform X1 [KO:K18368] [EC:3.1.1.-]
110823918  caffeoylshikimate esterase-like [KO:K18368] [EC:3.1.1.-]
110824771  caffeoylshikimate esterase [KO:K18368] [EC:3.1.1.-]
110826087  caffeoylshikimate esterase isoform X1 [KO:K18368] [EC:3.1.1.-]
110823967  caffeoylshikimate esterase-like [KO:K18368] [EC:3.1.1.-]
110806685  caffeoyl-CoA O-methyltransferase 2 [KO:K00588] [EC:2.1.1.104]
110823824  putative caffeoyl-CoA O-methyltransferase At1g67980 [KO:K00588] [EC:2.1.1.104]
110809744  probable caffeoyl-CoA O-methyltransferase At4g26220 [KO:K00588] [EC:2.1.1.104]
110824762  cinnamoyl-CoA reductase 1-like [KO:K09753] [EC:1.2.1.44]
110818570  aldehyde dehydrogenase family 2 member C4 [KO:K12355] [EC:1.2.1.68]
110822357  cytochrome P450 84A1-like [KO:K09755] [EC:1.14.-.-]
110808221  cytochrome P450 84A1-like [KO:K09755] [EC:1.14.-.-]
110822404  cytochrome P450 84A1-like [KO:K09755] [EC:1.14.-.-]
110823164  caffeic acid 3-O-methyltransferase [KO:K13066] [EC:2.1.1.68 2.1.1.4]
110810438  probable cinnamyl alcohol dehydrogenase 1 [KO:K00083] [EC:1.1.1.195]
110816554  LOW QUALITY PROTEIN: probable cinnamyl alcohol dehydrogenase 1 [KO:K00083] [EC:1.1.1.195]
110812924  probable mannitol dehydrogenase [KO:K00083] [EC:1.1.1.195]
110818179  probable cinnamyl alcohol dehydrogenase 6 [KO:K00083] [EC:1.1.1.195]
110822373  probable cinnamyl alcohol dehydrogenase [KO:K00083] [EC:1.1.1.195]
110807599  berberine bridge enzyme-like 15 [KO:K22395] [EC:1.1.1.195]
110808356  1-Cys peroxiredoxin [KO:K11188] [EC:1.11.1.7 1.11.1.27 3.1.1.-]
110807387  cationic peroxidase 1-like [KO:K00430] [EC:1.11.1.7]
110824968  LOW QUALITY PROTEIN: peroxidase N1-like [KO:K00430] [EC:1.11.1.7]
110818574  peroxidase 16-like [KO:K00430] [EC:1.11.1.7]
110823681  peroxidase 67-like [KO:K00430] [EC:1.11.1.7]
110820417  peroxidase 60-like [KO:K00430] [EC:1.11.1.7]
110825831  peroxidase 41-like [KO:K00430] [EC:1.11.1.7]
110824515  peroxidase 31-like [KO:K00430] [EC:1.11.1.7]
110822291  peroxidase 51-like [KO:K00430] [EC:1.11.1.7]
110822300  peroxidase 72 [KO:K00430] [EC:1.11.1.7]
110823282  peroxidase 5-like [KO:K00430] [EC:1.11.1.7]
110807434  peroxidase 51-like [KO:K00430] [EC:1.11.1.7]
110808512  peroxidase 9 [KO:K00430] [EC:1.11.1.7]
110809568  peroxidase E5-like [KO:K00430] [EC:1.11.1.7]
110809572  peroxidase A2-like [KO:K00430] [EC:1.11.1.7]
110810861  putative Peroxidase 48 [KO:K00430] [EC:1.11.1.7]
110819856  LOW QUALITY PROTEIN: peroxidase 24-like [KO:K00430] [EC:1.11.1.7]
110815250  peroxidase 13 [KO:K00430] [EC:1.11.1.7]
110816218  LOW QUALITY PROTEIN: peroxidase 43-like [KO:K00430] [EC:1.11.1.7]
110822511  peroxidase 64-like [KO:K00430] [EC:1.11.1.7]
110813794  peroxidase 10 [KO:K00430] [EC:1.11.1.7]
110816874  putative Peroxidase 48 [KO:K00430] [EC:1.11.1.7]
110821264  LOW QUALITY PROTEIN: peroxidase 40 [KO:K00430] [EC:1.11.1.7]
110822359  peroxidase 10-like [KO:K00430] [EC:1.11.1.7]
110809599  peroxidase E5-like [KO:K00430] [EC:1.11.1.7]
110814649  peroxidase 11 [KO:K00430] [EC:1.11.1.7]
110821721  peroxidase 3-like [KO:K00430] [EC:1.11.1.7]
110823792  peroxidase 4-like [KO:K00430] [EC:1.11.1.7]
110807856  peroxidase 3-like [KO:K00430] [EC:1.11.1.7]
110814472  peroxidase 17 [KO:K00430] [EC:1.11.1.7]
110819300  peroxidase 4-like isoform X1 [KO:K00430] [EC:1.11.1.7]
110821296  peroxidase 3-like [KO:K00430] [EC:1.11.1.7]
110822397  peroxidase N1-like [KO:K00430] [EC:1.11.1.7]
110822406  peroxidase N1-like [KO:K00430] [EC:1.11.1.7]
110806770  peroxidase 27-like [KO:K00430] [EC:1.11.1.7]
110807807  peroxidase 57 [KO:K00430] [EC:1.11.1.7]
110821807  peroxidase 2-like [KO:K00430] [EC:1.11.1.7]
110821815  peroxidase 27-like [KO:K00430] [EC:1.11.1.7]
110812706  peroxidase 25 [KO:K00430] [EC:1.11.1.7]
110806843  peroxidase 60 [KO:K00430] [EC:1.11.1.7]
110808625  peroxidase 47-like [KO:K00430] [EC:1.11.1.7]
110813903  probable peroxidase 61 [KO:K00430] [EC:1.11.1.7]
110823021  peroxidase 66 isoform X1 [KO:K00430] [EC:1.11.1.7]
110808044  peroxidase 42 [KO:K00430] [EC:1.11.1.7]
110815151  peroxidase 12 [KO:K00430] [EC:1.11.1.7]
110816154  LOW QUALITY PROTEIN: peroxidase N1-like [KO:K00430] [EC:1.11.1.7]
110816182  peroxidase N1-like [KO:K00430] [EC:1.11.1.7]
110818213  peroxidase 64-like [KO:K00430] [EC:1.11.1.7]
110819207  peroxidase P7 [KO:K00430] [EC:1.11.1.7]
110821000  peroxidase 21 [KO:K00430] [EC:1.11.1.7]
110822016  peroxidase 19 [KO:K00430] [EC:1.11.1.7]
110825269  peroxidase 6 [KO:K00430] [EC:1.11.1.7]
110813018  LOW QUALITY PROTEIN: peroxidase A2-like [KO:K00430] [EC:1.11.1.7]
110811065  peroxidase 16-like [KO:K00430] [EC:1.11.1.7]
110807891  UDP-glycosyltransferase 72E1-like [KO:K12356] [EC:2.4.1.111]
110807897  anthocyanidin 3-O-glucosyltransferase 5-like [KO:K12356] [EC:2.4.1.111]
Compound
C00079  L-Phenylalanine
C00082  L-Tyrosine
C00223  p-Coumaroyl-CoA
C00315  Spermidine
C00323  Caffeoyl-CoA
C00406  Feruloyl-CoA
C00411  Sinapoyl-CoA
C00423  trans-Cinnamate
C00482  Sinapate
C00540  Cinnamoyl-CoA
C00590  Coniferyl alcohol
C00761  Coniferin
C00811  4-Coumarate
C00852  Chlorogenate
C00903  Cinnamaldehyde
C00933  Sinapine
C01175  1-O-Sinapoyl-beta-D-glucose
C01197  Caffeate
C01494  Ferulate
C01533  Syringin
C02325  Sinapyl alcohol
C02646  4-Coumaryl alcohol
C02666  Coniferyl aldehyde
C02887  Sinapoyl malate
C02947  4-Coumaroylshikimate
C04366  3-(2-Carboxyethenyl)-cis,cis-muconate
C05608  4-Hydroxycinnamyl aldehyde
C05610  Sinapoyl aldehyde
C05619  5-Hydroxyferulic acid
C05627  4-Hydroxystyrene
C05855  4-Hydroxycinnamyl alcohol 4-D-glucoside
C06224  3,4-Dihydroxystyrene
C10428  Anethole
C10434  5-O-Caffeoylshikimic acid
C10452  Estragole
C10453  Eugenol
C10454  Methyleugenol
C10469  Isoeugenol
C10478  Methylisoeugenol
C10945  Caffeic aldehyde
C12203  5-Hydroxyferuloyl-CoA
C12204  5-Hydroxyconiferaldehyde
C12205  5-Hydroxyconiferyl alcohol
C12206  Caffeyl alcohol
C12208  p-Coumaroyl quinic acid
C15804  p-Hydroxyphenyl lignin
C15805  Guaiacyl lignin
C15806  Syringyl lignin
C15807  5-Hydroxy-guaiacyl lignin
C16930  Chavicol
C18069  N1,N5,N10-Tricoumaroyl spermidine
C18070  N1,N5,N10-Tricaffeoyl spermidine
C18071  N1,N5,N10-Triferuloyl spermidine
C18072  N1,N5,N10-Tri(hydroxyferuloyl) spermidine
C18073  N1,N5-Di(hydroxyferuloyl)-N10-sinapoyl spermidine
C20225  Coniferyl acetate
C20464  Isochavicol
C20465  Coumaryl acetate
Reference
  Authors
Nair RB, Bastress KL, Ruegger MO, Denault JW, Chapple C.
  Title
The Arabidopsis thaliana REDUCED EPIDERMAL FLUORESCENCE1 gene encodes an aldehyde dehydrogenase involved in ferulic acid and sinapic acid biosynthesis.
  Journal
Plant Cell 16:544-54 (2004)
DOI:10.1105/tpc.017509
Reference
  Authors
Baucher M, Halpin C, Petit-Conil M, Boerjan W.
  Title
Lignin: genetic engineering and impact on pulping.
  Journal
Crit Rev Biochem Mol Biol 38:305-50 (2003)
DOI:10.1080/10409230391036757
Reference
  Authors
Rogers LA, Dubos C, Cullis IF, Surman C, Poole M, Willment J, Mansfield SD, Campbell MM.
  Title
Light, the circadian clock, and sugar perception in the control of lignin biosynthesis.
  Journal
J Exp Bot 56:1651-63 (2005)
DOI:10.1093/jxb/eri162
Reference
  Authors
Whetten R, Sederoff R.
  Title
Lignin Biosynthesis.
  Journal
Plant Cell 7:1001-1013 (1995)
DOI:10.1105/tpc.7.7.1001
Reference
PMID:8972602
  Authors
Lorenzen M, Racicot V, Strack D, Chapple C.
  Title
Sinapic acid ester metabolism in wild type and a sinapoylglucose-accumulating mutant of arabidopsis.
  Journal
Plant Physiol 112:1625-30 (1996)
DOI:10.1104/pp.112.4.1625
Reference
PMID:1477555
  Authors
Chapple CC, Vogt T, Ellis BE, Somerville CR.
  Title
An Arabidopsis mutant defective in the general phenylpropanoid pathway.
  Journal
Plant Cell 4:1413-24 (1992)
DOI:10.1105/tpc.4.11.1413
Reference
  Authors
Raes J, Rohde A, Christensen JH, Van de Peer Y, Boerjan W.
  Title
Genome-wide characterization of the lignification toolbox in Arabidopsis.
  Journal
Plant Physiol 133:1051-71 (2003)
DOI:10.1104/pp.103.026484
Reference
  Authors
Costa MA, Collins RE, Anterola AM, Cochrane FC, Davin LB, Lewis NG.
  Title
An in silico assessment of gene function and organization of the phenylpropanoid pathway metabolic networks in Arabidopsis thaliana and limitations thereof.
  Journal
Phytochemistry 64:1097-112 (2003)
DOI:10.1016/S0031-9422(03)00517-X
Reference
  Authors
Meyermans H, Morreel K, Lapierre C, Pollet B, De Bruyn A, Busson R, Herdewijn P, Devreese B, Van Beeumen J, Marita JM, Ralph J, Chen C, Burggraeve B, Van Montagu M, Messens E, Boerjan W.
  Title
Modifications in lignin and accumulation of phenolic glucosides in poplar xylem upon down-regulation of caffeoyl-coenzyme A O-methyltransferase, an enzyme involved in lignin biosynthesis.
  Journal
J Biol Chem 275:36899-909 (2000)
DOI:10.1074/jbc.M006915200
Reference
  Authors
Gachon CM, Langlois-Meurinne M, Henry Y, Saindrenan P.
  Title
Transcriptional co-regulation of secondary metabolism enzymes in Arabidopsis: functional and evolutionary implications.
  Journal
Plant Mol Biol 58:229-45 (2005)
DOI:10.1007/s11103-005-5346-5
Reference
  Authors
Li L, Popko JL, Umezawa T, Chiang VL.
  Title
5-hydroxyconiferyl aldehyde modulates enzymatic methylation for syringyl monolignol formation, a new view of monolignol biosynthesis in angiosperms.
  Journal
J Biol Chem 275:6537-45 (2000)
DOI:10.1074/jbc.275.9.6537
Reference
  Authors
Yamauchi K, Yasuda S, Fukushima K.
  Title
Evidence for the biosynthetic pathway from sinapic acid to syringyl lignin using labeled sinapic acid with stable isotope at both methoxy groups in Robinia pseudoacacia and Nerium indicum.
  Journal
J Agric Food Chem 50:3222-7 (2002)
DOI:10.1021/jf011565x
Reference
  Authors
Eckardt NA.
  Title
Probing the mysteries of lignin biosynthesis: the crystal structure of caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase provides new insights.
  Journal
Plant Cell 14:1185-9 (2002)
DOI:10.1105/tpc.140610
Related
pathway
cpap00130  Ubiquinone and other terpenoid-quinone biosynthesis
cpap00400  Phenylalanine, tyrosine and tryptophan biosynthesis
cpap00941  Flavonoid biosynthesis
cpap00945  Stilbenoid, diarylheptanoid and gingerol biosynthesis
KO pathway
ko00940   
LinkDB

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