KEGG   PATHWAY: cpho00020
Entry
cpho00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Corynebacterium phocae
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
cpho00020  Citrate cycle (TCA cycle)
cpho00020

Module
cpho_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:cpho00020]
cpho_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:cpho00020]
cpho_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:cpho00020]
cpho_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:cpho00020]
cpho_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:cpho00020]
Other DBs
GO: 0006099
Organism
Corynebacterium phocae [GN:cpho]
Gene
CPHO_09180  citrate synthase [KO:K01647] [EC:2.3.3.1]
CPHO_05950  acnA; aconitate hydratase [KO:K01681] [EC:4.2.1.3]
CPHO_09895  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
CPHO_07795  kgd; alpha-ketoglutarate decarboxylase [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
CPHO_01305  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
CPHO_02535  acetyl-CoA hydrolase [KO:K18118] [EC:2.8.3.18]
CPHO_01340  sdhA; succinate dehydrogenase [KO:K00239] [EC:1.3.5.1]
CPHO_01345  succinate dehydrogenase [KO:K00240] [EC:1.3.5.1]
CPHO_01335  succinate dehydrogenase [KO:K00241]
CPHO_08055  aspA; aspartate ammonia-lyase [KO:K01679] [EC:4.2.1.2]
CPHO_03200  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
CPHO_04865  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
CPHO_09800  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
CPHO_11365  phosphoenolpyruvate carboxykinase [KO:K01596] [EC:4.1.1.32]
CPHO_03765  pyruvate dehydrogenase [KO:K00163] [EC:1.2.4.1]
CPHO_04045  pyruvate dehydrogenase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
cpho00010  Glycolysis / Gluconeogenesis
cpho00053  Ascorbate and aldarate metabolism
cpho00061  Fatty acid biosynthesis
cpho00071  Fatty acid degradation
cpho00190  Oxidative phosphorylation
cpho00220  Arginine biosynthesis
cpho00250  Alanine, aspartate and glutamate metabolism
cpho00280  Valine, leucine and isoleucine degradation
cpho00350  Tyrosine metabolism
cpho00470  D-Amino acid metabolism
cpho00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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