KEGG   PATHWAY: cpi00020
Entry
cpi00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Chitinophaga pinensis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
cpi00020  Citrate cycle (TCA cycle)
cpi00020

Module
cpi_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:cpi00020]
cpi_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:cpi00020]
cpi_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:cpi00020]
cpi_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:cpi00020]
cpi_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:cpi00020]
Other DBs
GO: 0006099
Organism
Chitinophaga pinensis [GN:cpi]
Gene
Cpin_6916  citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
Cpin_2016  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
Cpin_2074  aconitase B, N-terminal subunit [KO:K01682] [EC:4.2.1.3 4.2.1.99]
Cpin_6591  isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
Cpin_6592  isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
Cpin_6840  2-oxoglutarate dehydrogenase, E1 subunit [KO:K00164] [EC:1.2.4.2]
Cpin_6126  2-oxoglutarate dehydrogenase, E1 subunit [KO:K00164] [EC:1.2.4.2]
Cpin_2331  catalytic domain of components of various dehydrogenase complexes [KO:K00658] [EC:2.3.1.61]
Cpin_6839  2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
Cpin_6263  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Cpin_7124  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Cpin_1154  pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [KO:K00174] [EC:1.2.7.3 1.2.7.11]
Cpin_1031  thiamine pyrophosphate protein domain protein TPP-binding [KO:K00175] [EC:1.2.7.3 1.2.7.11]
Cpin_1213  succinyl-CoA synthetase, alpha subunit [KO:K01902] [EC:6.2.1.5]
Cpin_6602  succinyl-CoA synthetase, beta subunit [KO:K01903] [EC:6.2.1.5]
Cpin_6535  succinate dehydrogenase or fumarate reductase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
Cpin_6534  succinate dehydrogenase and fumarate reductase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
Cpin_6536  succinate dehydrogenase (or fumarate reductase) cytochrome b subunit, b558 family [KO:K00241]
Cpin_0238  fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
Cpin_1656  malate dehydrogenase, NAD-dependent [KO:K00024] [EC:1.1.1.37]
Cpin_2378  malate/quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
Cpin_6930  phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
Cpin_5455  pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit [KO:K00161] [EC:1.2.4.1]
Cpin_6441  Transketolase central region [KO:K00162] [EC:1.2.4.1]
Cpin_7085  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
cpi00010  Glycolysis / Gluconeogenesis
cpi00053  Ascorbate and aldarate metabolism
cpi00061  Fatty acid biosynthesis
cpi00071  Fatty acid degradation
cpi00190  Oxidative phosphorylation
cpi00220  Arginine biosynthesis
cpi00250  Alanine, aspartate and glutamate metabolism
cpi00280  Valine, leucine and isoleucine degradation
cpi00350  Tyrosine metabolism
cpi00470  D-Amino acid metabolism
cpi00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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