KEGG   PATHWAY: cpic03430
Entry
cpic03430                   Pathway                                
Name
Mismatch repair - Chrysemys picta (western painted turtle)
Description
DNA mismatch repair (MMR) is a highly conserved biological pathway that plays a key role in maintaining genomic stability. MMR corrects DNA mismatches generated during DNA replication, thereby preventing mutations from becoming permanent in dividing cells. MMR also suppresses homologous recombination and was recently shown to play a role in DNA damage signaling. Defects in MMR are associated with genome-wide instability, predisposition to certain types of cancer including HNPCC, resistance to certain chemotherapeutic agents, and abnormalities in meiosis and sterility in mammalian systems.
The Escherichia coli MMR pathway has been extensively studied and is well characterized. In E. coli, the mismatch-activated MutS-MutL-ATP complex licenses MutH to incise the nearest unmethylated GATC sequence. UvrD and an exonuclease generate a gap. This gap is filled by pol III and DNA ligase. The GATC sites are then methylated by Dam. Several human MMR proteins have been identified based on their homology to E. coli MMR proteins. These include human homologs of MutS and MutL. Although E. coli MutS and MutL proteins are homodimers, human MutS and MutL homologs are heterodimers. The role of hemimethylated dGATC sites as a signal for strand discrimination is not conserved from E. coli to human. Human MMR is presumed to be nick-directed in vivo, and is thought to discriminate daughter and template strands using a strand-specific nick.
Class
Genetic Information Processing; Replication and repair
Pathway map
cpic03430  Mismatch repair
cpic03430

Other DBs
GO: 0006298
Organism
Chrysemys picta (western painted turtle) [GN:cpic]
Gene
101941681  SSBP1; single-stranded DNA-binding protein, mitochondrial [KO:K03111]
101936852  PMS2; mismatch repair endonuclease PMS2 isoform X2 [KO:K10858]
101944842  MLH1; DNA mismatch repair protein Mlh1 isoform X1 [KO:K08734]
101951836  MSH6; LOW QUALITY PROTEIN: DNA mismatch repair protein Msh6 [KO:K08737]
101937123  MSH2; DNA mismatch repair protein Msh2 isoform X1 [KO:K08735]
101935055  MSH3; DNA mismatch repair protein Msh3 isoform X1 [KO:K08736]
101935746  MLH3; DNA mismatch repair protein Mlh3 [KO:K08739]
101949445  RFC1; replication factor C subunit 1 [KO:K10754]
101941149  RFC2; replication factor C subunit 2 isoform X2 [KO:K10755]
101945795  RFC4; replication factor C subunit 4 [KO:K10755]
101938486  RFC5; replication factor C subunit 5 [KO:K10756]
101933476  RFC3; replication factor C subunit 3 isoform X1 [KO:K10756]
101934567  PCNA; proliferating cell nuclear antigen [KO:K04802]
101953055  EXO1; exonuclease 1 [KO:K10746] [EC:3.1.-.-]
101944653  RPA1; replication protein A 70 kDa DNA-binding subunit isoform X1 [KO:K07466]
101941712  RPA2; replication protein A 32 kDa subunit [KO:K10739]
101943683  RPA3; replication protein A 14 kDa subunit [KO:K10740]
101938725  DNA polymerase delta catalytic subunit [KO:K02327] [EC:2.7.7.7]
101935988  POLD2; DNA polymerase delta subunit 2 [KO:K02328]
101946378  POLD3; DNA polymerase delta subunit 3 isoform X1 [KO:K03504]
101945484  POLD4; DNA polymerase delta subunit 4 isoform X1 [KO:K03505]
101937304  LIG1; DNA ligase 1 isoform X1 [KO:K10747] [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Reference
  Authors
Jiricny J.
  Title
The multifaceted mismatch-repair system.
  Journal
Nat Rev Mol Cell Biol 7:335-46 (2006)
DOI:10.1038/nrm1907
Reference
  Authors
Li GM.
  Title
Mechanisms and functions of DNA mismatch repair.
  Journal
Cell Res 18:85-98 (2008)
DOI:10.1038/cr.2007.115
Reference
  Authors
Marti TM, Kunz C, Fleck O.
  Title
DNA mismatch repair and mutation avoidance pathways.
  Journal
J Cell Physiol 191:28-41 (2002)
DOI:10.1002/jcp.10077
Reference
  Authors
Ikejima M, Shimada T.
  Title
[Molecular mechanism of mismatch repair]
  Journal
Tanpakushitsu Kakusan Koso 46:1124-9 (2001)
KO pathway
ko03430   
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