KEGG   PATHWAY: cpra00630
Entry
cpra00630                   Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Collimonas pratensis
Class
Metabolism; Carbohydrate metabolism
Pathway map
cpra00630  Glyoxylate and dicarboxylate metabolism
cpra00630

Module
cpra_M00012  Glyoxylate cycle [PATH:cpra00630]
cpra_M00621  Glycine cleavage system [PATH:cpra00630]
Other DBs
GO: 0046487 0043648
Organism
Collimonas pratensis [GN:cpra]
Gene
CPter91_2036  aceA; isocitrate lyase [KO:K01637] [EC:4.1.3.1 4.1.3.30]
CPter91_1450  AMP-binding enzyme family protein [KO:K01895] [EC:6.2.1.1]
CPter91_4119  acs; acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
CPter91_3152  aceB; malate synthase A [KO:K01638] [EC:2.3.3.9]
CPter91_2284  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
CPter91_2292  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
CPter91_3864  citrate synthase family protein [KO:K01647] [EC:2.3.3.1]
CPter91_4111  2-methylcitrate synthase/citrate synthase II family protein [KO:K01659] [EC:2.3.3.5]
CPter91_2281  acnA; aconitate hydratase 1 [KO:K27802] [EC:4.2.1.3 4.2.1.99]
CPter91_0566  acetyl-CoA C-acetyltransferase family protein [KO:K00626] [EC:2.3.1.9]
CPter91_3866  acetyl-CoA C-acetyltransferase family protein [KO:K00626] [EC:2.3.1.9]
CPter91_5341  acetyl-CoA C-acetyltransferase family protein [KO:K00626] [EC:2.3.1.9]
CPter91_2318  phbB-1; acetoacetyl-CoA reductase [KO:K00023] [EC:1.1.1.36]
CPter91_0860  FAD linked oxidase, C-terminal domain protein [KO:K00104] [EC:1.1.99.14]
CPter91_0861  FAD binding domain protein [KO:K11472] [EC:1.1.99.14]
CPter91_0862  4Fe-4S binding domain protein [KO:K11473] [EC:1.1.99.14]
CPter91_2867  catalase family protein [KO:K03781] [EC:1.11.1.6]
CPter91_0389  NAD binding domain of 6-phosphogluconate dehydrogenase family protein [KO:K12972] [EC:1.1.1.79 1.1.1.81]
CPter91_5323  NAD binding domain of 6-phosphogluconate dehydrogenase family protein [KO:K12972] [EC:1.1.1.79 1.1.1.81]
CPter91_3077  NAD binding domain of 6-phosphogluconate dehydrogenase family protein [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
CPter91_1468  NAD binding domain of 6-phosphogluconate dehydrogenase family protein [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
CPter91_0813  gph; phosphoglycolate phosphatase, bacterial [KO:K01091] [EC:3.1.3.18]
CPter91_1657  HAD hydrolase, IA, variant 1 family protein [KO:K01091] [EC:3.1.3.18]
CPter91_3387  haloacid dehalogenase-like hydrolase family protein [KO:K01091] [EC:3.1.3.18]
CPter91_0046  aminotransferase class-V family protein [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
CPter91_3718  serine hydroxymethyltransferase family protein [KO:K00600] [EC:2.1.2.1]
CPter91_4152  aminotransferase class-V family protein [KO:K00600] [EC:2.1.2.1]
CPter91_1406  glyA2; serine hydroxymethyltransferase 2 [KO:K00600] [EC:2.1.2.1]
CPter91_2615  gcvP; glycine dehydrogenase [KO:K00281] [EC:1.4.4.2]
CPter91_2616  gcvT; glycine cleavage system T protein [KO:K00605] [EC:2.1.2.10]
CPter91_4383  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
CPter91_2296  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
CPter91_2614  gcvH; glycine cleavage system H protein [KO:K02437]
CPter91_4287  gcl; glyoxylate carboligase [KO:K01608] [EC:4.1.1.47]
CPter91_4286  hyi; hydroxypyruvate isomerase [KO:K01816] [EC:5.3.1.22]
CPter91_4285  2-hydroxy-3-oxopropionate reductase [KO:K00042] [EC:1.1.1.60]
CPter91_4284  hypothetical protein [KO:K11529] [EC:2.7.1.165]
CPter91_0387  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
CPter91_3519  eda; 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase family protein [KO:K01625] [EC:4.1.2.14 4.1.3.42]
CPter91_1043  NADH-dependent formate dehydrogenase delta subunit FdsD family protein [KO:K00126] [EC:1.17.1.9]
CPter91_0960  formate dehydrogenase, alpha subunit [KO:K00123] [EC:1.17.1.9]
CPter91_0961  TAT (twin-arginine translocation) pathway signal sequence family protein [KO:K00123] [EC:1.17.1.9]
CPter91_1041  formate dehydrogenase, alpha subunit [KO:K00123] [EC:1.17.1.9]
CPter91_1040  SLBB domain protein [KO:K00124]
CPter91_0959  fdxH; formate dehydrogenase, beta subunit [KO:K00124]
CPter91_1039  respiratory-chain NADH dehydrogenase 24 Kd subunit [KO:K00127]
CPter91_0958  formate dehydrogenase, gamma subunit [KO:K00127]
CPter91_4079  kynB; kynurenine formamidase [KO:K07130] [EC:3.5.1.9]
CPter91_3535  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
CPter91_3107  hutG; N-formylglutamate deformylase [KO:K01458] [EC:3.5.1.68]
CPter91_2586  frc; formyl-CoA transferase [KO:K07749] [EC:2.8.3.16]
CPter91_2588  frc; formyl-CoA transferase [KO:K07749] [EC:2.8.3.16]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
cpra00010  Glycolysis / Gluconeogenesis
cpra00020  Citrate cycle (TCA cycle)
cpra00030  Pentose phosphate pathway
cpra00053  Ascorbate and aldarate metabolism
cpra00071  Fatty acid degradation
cpra00230  Purine metabolism
cpra00250  Alanine, aspartate and glutamate metabolism
cpra00260  Glycine, serine and threonine metabolism
cpra00620  Pyruvate metabolism
cpra00710  Carbon fixation by Calvin cycle
cpra00750  Vitamin B6 metabolism
cpra00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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