KEGG   PATHWAY: cpsc00020
Entry
cpsc00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Chlamydia psittaci CP3
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
cpsc00020  Citrate cycle (TCA cycle)
cpsc00020

Module
cpsc_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:cpsc00020]
cpsc_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:cpsc00020]
Other DBs
GO: 0006099
Organism
Chlamydia psittaci CP3 [GN:cpsc]
Gene
B711_0485  sucA; oxoglutarate dehydrogenase (succinyl-transferring), E1 component [KO:K00164] [EC:1.2.4.2]
B711_0486  sucB; dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase [KO:K00658] [EC:2.3.1.61]
B711_0252  2-oxoacid dehydrogenases acyltransferase family protein [KO:K00658] [EC:2.3.1.61]
B711_1065  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
B711_0898  sucD; succinate-CoA ligase, alpha subunit [KO:K01902] [EC:6.2.1.5]
B711_0899  sucC; succinyl-CoA ligase [ADP-forming] subunit beta [KO:K01903] [EC:6.2.1.5]
B711_1108  sdhA; succinate dehydrogenase/fumarate reductase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
B711_1107  succinate dehydrogenase and fumarate reductase iron-sulfur family protein [KO:K00240] [EC:1.3.5.1]
B711_1109  putative membrane protein [KO:K00241]
B711_0858  fumC; fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
B711_0843  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
B711_1044  phosphoenolpyruvate carboxykinase family protein [KO:K01596] [EC:4.1.1.32]
B711_0554  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit [KO:K00161] [EC:1.2.4.1]
B711_0553  pdhB; pyruvate dehydrogenase E1 component, beta subunit [KO:K00162] [EC:1.2.4.1]
B711_0552  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
cpsc00010  Glycolysis / Gluconeogenesis
cpsc00061  Fatty acid biosynthesis
cpsc00190  Oxidative phosphorylation
cpsc00250  Alanine, aspartate and glutamate metabolism
cpsc00280  Valine, leucine and isoleucine degradation
cpsc00470  D-Amino acid metabolism
cpsc00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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