KEGG   PATHWAY: cpsu00020
Entry
cpsu00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Corynebacterium pseudotuberculosis CS_10
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
cpsu00020  Citrate cycle (TCA cycle)
cpsu00020

Module
cpsu_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:cpsu00020]
cpsu_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:cpsu00020]
cpsu_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:cpsu00020]
cpsu_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:cpsu00020]
cpsu_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:cpsu00020]
Other DBs
GO: 0006099
Organism
Corynebacterium pseudotuberculosis CS_10 [GN:cpsu]
Gene
CPTB_00378  Citrate synthase (si) [KO:K01647] [EC:2.3.3.1]
CPTB_02113  Aconitate hydratase [KO:K27802] [EC:4.2.1.3 4.2.1.99]
CPTB_00531  Isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
CPTB_00179  Dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex / 2-oxoglutarate dehydrogenase E1 component [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
CPTB_00761  Dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
CPTB_01443  putative coenzyme A transferase [KO:K18118] [EC:2.8.3.18]
CPTB_00758  Succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
CPTB_00757  Succinate dehydrogenase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
CPTB_00759  Succinate dehydrogenase cytochrome b subunit [KO:K00241]
CPTB_00241  Fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
CPTB_01566  Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
CPTB_01890  Malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
CPTB_00513  Pyruvate carboxyl transferase [KO:K01958] [EC:6.4.1.1]
CPTB_01191  Phosphoenolpyruvate carboxykinase [GTP] [KO:K01596] [EC:4.1.1.32]
CPTB_01670  Pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
CPTB_01739  Dihydrolipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
cpsu00010  Glycolysis / Gluconeogenesis
cpsu00053  Ascorbate and aldarate metabolism
cpsu00061  Fatty acid biosynthesis
cpsu00071  Fatty acid degradation
cpsu00190  Oxidative phosphorylation
cpsu00220  Arginine biosynthesis
cpsu00250  Alanine, aspartate and glutamate metabolism
cpsu00280  Valine, leucine and isoleucine degradation
cpsu00350  Tyrosine metabolism
cpsu00470  D-Amino acid metabolism
cpsu00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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