KEGG   PATHWAY: crd00020
Entry
crd00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Corynebacterium resistens
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
crd00020  Citrate cycle (TCA cycle)
crd00020

Module
crd_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:crd00020]
crd_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:crd00020]
crd_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:crd00020]
crd_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:crd00020]
crd_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:crd00020]
Other DBs
GO: 0006099
Organism
Corynebacterium resistens [GN:crd]
Gene
CRES_0336  gltA; Citrate synthase [KO:K01647] [EC:2.3.3.1]
CRES_1051  acn; aconitase [KO:K01681] [EC:4.2.1.3]
CRES_1783  icd; isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
CRES_1449  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
CRES_1982  lpd; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
CRES_1784  sucD; Succinyl-CoA synthetase, alpha subunit [KO:K01902] [EC:6.2.1.5]
CRES_1785  sucC; Succinyl-CoA synthetase, beta subunit [KO:K01903] [EC:6.2.1.5]
CRES_0103  cat1; succinyl-CoA:coenzyme A transferase [KO:K18118] [EC:2.8.3.18]
CRES_1974  sdhA; succinate dehydrogenase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
CRES_1973  sdhB; succinate dehydrogenase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
CRES_1975  sdhC; succinate dehydrogenase subunit [KO:K00241]
CRES_1590  fum; Fumarase [KO:K01679] [EC:4.2.1.2]
CRES_0628  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
CRES_1242  mqo; malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
CRES_0553  pck; phosphoenolpyruvate carboxykinase [KO:K01596] [EC:4.1.1.32]
CRES_0711  aceE; pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
CRES_0746  sucB; dihydrolipoamide succinyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
crd00010  Glycolysis / Gluconeogenesis
crd00061  Fatty acid biosynthesis
crd00071  Fatty acid degradation
crd00190  Oxidative phosphorylation
crd00220  Arginine biosynthesis
crd00250  Alanine, aspartate and glutamate metabolism
crd00280  Valine, leucine and isoleucine degradation
crd00350  Tyrosine metabolism
crd00470  D-Amino acid metabolism
crd00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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