KEGG   PATHWAY: cros00020
Entry
cros00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Crossiella sp. CA-258035
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
cros00020  Citrate cycle (TCA cycle)
cros00020

Module
cros_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:cros00020]
cros_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:cros00020]
cros_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:cros00020]
cros_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:cros00020]
cros_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:cros00020]
Other DBs
GO: 0006099
Organism
Crossiella sp. CA-258035 [GN:cros]
Gene
N8J89_02845  citrate synthase 2 [KO:K01647] [EC:2.3.3.1]
N8J89_02915  citrate synthase [KO:K01647] [EC:2.3.3.1]
N8J89_13785  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
N8J89_03565  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
N8J89_05200  multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
N8J89_09150  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
N8J89_23020  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
N8J89_38780  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
N8J89_38785  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
N8J89_14760  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
N8J89_37815  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
N8J89_14755  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
N8J89_37820  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
N8J89_04120  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
N8J89_09800  fumarate reductase/succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
N8J89_12455  fumarate reductase/succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
N8J89_04115  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
N8J89_09805  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
N8J89_12460  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
N8J89_04130  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
N8J89_12450  succinate dehydrogenase cytochrome b subunit [KO:K00241]
N8J89_04125  succinate dehydrogenase hydrophobic membrane anchor subunit [KO:K00242]
N8J89_10515  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
N8J89_37060  class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
N8J89_37695  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
N8J89_34140  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
N8J89_41135  phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
N8J89_08670  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
N8J89_09145  sucB; 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
cros00010  Glycolysis / Gluconeogenesis
cros00053  Ascorbate and aldarate metabolism
cros00061  Fatty acid biosynthesis
cros00071  Fatty acid degradation
cros00190  Oxidative phosphorylation
cros00220  Arginine biosynthesis
cros00250  Alanine, aspartate and glutamate metabolism
cros00280  Valine, leucine and isoleucine degradation
cros00350  Tyrosine metabolism
cros00470  D-Amino acid metabolism
cros00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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