KEGG   PATHWAY: csab00020
Entry
csab00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Chlorocebus sabaeus (green monkey)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
csab00020  Citrate cycle (TCA cycle)
csab00020

Module
csab_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:csab00020]
csab_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:csab00020]
csab_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:csab00020]
csab_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:csab00020]
csab_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:csab00020]
Other DBs
GO: 0006099
Organism
Chlorocebus sabaeus (green monkey) [GN:csab]
Gene
103238519  CS; citrate synthase [KO:K01647] [EC:2.3.3.1]
103243859  ACLY; ATP citrate lyase [KO:K01648] [EC:2.3.3.8]
103223383  ACO2; aconitase 2 [KO:K01681] [EC:4.2.1.3]
103219310  ACO1; aconitase 1 [KO:K01681] [EC:4.2.1.3]
103231165  IDH2; isocitrate dehydrogenase (NADP(+)) 2, mitochondrial [KO:K00031] [EC:1.1.1.42]
103217738  IDH1; isocitrate dehydrogenase (NADP(+)) 1, cytosolic [KO:K00031] [EC:1.1.1.42]
103245258  IDH3A; isocitrate dehydrogenase 3 (NAD(+)) alpha [KO:K00030] [EC:1.1.1.41]
103232801  IDH3G; isocitrate dehydrogenase 3 (NAD(+)) gamma [KO:K00030] [EC:1.1.1.41]
103215621  IDH3B; isocitrate dehydrogenase 3 (NAD(+)) beta [KO:K00030] [EC:1.1.1.41]
103215824  OGDHL; oxoglutarate dehydrogenase-like [KO:K00164] [EC:1.2.4.2]
103226133  OGDH; oxoglutarate dehydrogenase [KO:K00164] [EC:1.2.4.2]
103229338  DLST; dihydrolipoamide S-succinyltransferase [KO:K00658] [EC:2.3.1.61]
103226725  DLD; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
103219966  SUCLG1; succinate-CoA ligase alpha subunit [KO:K01899] [EC:6.2.1.4 6.2.1.5]
103227863  SUCLG2; succinate-CoA ligase GDP-forming beta subunit [KO:K01900] [EC:6.2.1.4 6.2.1.5]
103214398  SUCLA2; succinate-CoA ligase ADP-forming beta subunit [KO:K01900] [EC:6.2.1.4 6.2.1.5]
103215231  SDHA; succinate dehydrogenase complex flavoprotein subunit A [KO:K00234] [EC:1.3.5.1]
103215235  succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial-like [KO:K00234] [EC:1.3.5.1]
103225507  SDHB; succinate dehydrogenase complex iron sulfur subunit B [KO:K00235] [EC:1.3.5.1]
103223678  SDHC; succinate dehydrogenase complex subunit C [KO:K00236]
103225005  succinate dehydrogenase cytochrome b560 subunit, mitochondrial-like [KO:K00236]
103216985  succinate dehydrogenase cytochrome b560 subunit, mitochondrial-like [KO:K00236]
103240581  succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial-like [KO:K00237]
103248461  SDHD; succinate dehydrogenase complex subunit D [KO:K00237]
103230849  FH; fumarate hydratase [KO:K01679] [EC:4.2.1.2]
103220175  MDH1; malate dehydrogenase 1 [KO:K00025] [EC:1.1.1.37]
103246656  MDH2; malate dehydrogenase 2 [KO:K00026] [EC:1.1.1.37]
103219837  PC; pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
103228704  PCK2; phosphoenolpyruvate carboxykinase 2, mitochondrial [KO:K01596] [EC:4.1.1.32]
103243712  PCK1; phosphoenolpyruvate carboxykinase 1 [KO:K01596] [EC:4.1.1.32]
103231682  PDHA1; pyruvate dehydrogenase (lipoamide) alpha 1 [KO:K00161] [EC:1.2.4.1]
103235992  PDHA2; pyruvate dehydrogenase (lipoamide) alpha 2 [KO:K00161] [EC:1.2.4.1]
103227812  PDHB; pyruvate dehydrogenase (lipoamide) beta [KO:K00162] [EC:1.2.4.1]
103248460  DLAT; dihydrolipoamide S-acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
csab00010  Glycolysis / Gluconeogenesis
csab00053  Ascorbate and aldarate metabolism
csab00061  Fatty acid biosynthesis
csab00062  Fatty acid elongation
csab00071  Fatty acid degradation
csab00190  Oxidative phosphorylation
csab00220  Arginine biosynthesis
csab00250  Alanine, aspartate and glutamate metabolism
csab00280  Valine, leucine and isoleucine degradation
csab00350  Tyrosine metabolism
csab00470  D-Amino acid metabolism
csab00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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