KEGG   PATHWAY: csac00020
Entry
csac00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Chitinophaga sancti
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
csac00020  Citrate cycle (TCA cycle)
csac00020

Module
csac_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:csac00020]
csac_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:csac00020]
csac_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:csac00020]
csac_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:csac00020]
csac_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:csac00020]
Other DBs
GO: 0006099
Organism
Chitinophaga sancti [GN:csac]
Gene
SIO70_31425  citrate (Si)-synthase, eukaryotic [KO:K01647] [EC:2.3.3.1]
SIO70_11470  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
SIO70_07780  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
SIO70_29415  icd; NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
SIO70_29420  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
SIO70_31065  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
SIO70_31060  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
SIO70_12595  dihydrolipoamide acetyltransferase family protein [KO:K00658] [EC:2.3.1.61]
SIO70_27635  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
SIO70_07110  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
SIO70_06300  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
SIO70_07360  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
SIO70_29445  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
SIO70_20595  fumarate reductase/succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
SIO70_29120  fumarate reductase/succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
SIO70_20590  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
SIO70_29115  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
SIO70_20600  succinate dehydrogenase cytochrome b subunit [KO:K00241]
SIO70_29125  succinate dehydrogenase cytochrome b subunit [KO:K00241]
SIO70_02785  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
SIO70_09450  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
SIO70_12855  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
SIO70_31505  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
SIO70_17090  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
SIO70_12350  pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
SIO70_32245  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
SIO70_24305  nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
csac00010  Glycolysis / Gluconeogenesis
csac00053  Ascorbate and aldarate metabolism
csac00061  Fatty acid biosynthesis
csac00071  Fatty acid degradation
csac00190  Oxidative phosphorylation
csac00220  Arginine biosynthesis
csac00250  Alanine, aspartate and glutamate metabolism
csac00280  Valine, leucine and isoleucine degradation
csac00350  Tyrosine metabolism
csac00470  D-Amino acid metabolism
csac00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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