KEGG   PATHWAY: csav00020
Entry
csav00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Cannabis sativa (hemp)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
csav00020  Citrate cycle (TCA cycle)
csav00020

Module
csav_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:csav00020]
csav_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:csav00020]
csav_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:csav00020]
csav_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:csav00020]
csav_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:csav00020]
Other DBs
GO: 0006099
Organism
Cannabis sativa (hemp) [GN:csav]
Gene
115699414  LOW QUALITY PROTEIN: citrate synthase, glyoxysomal [KO:K01647] [EC:2.3.3.1]
115724911  citrate synthase, mitochondrial [KO:K01647] [EC:2.3.3.1]
115719086  ATP-citrate synthase alpha chain protein 2 [KO:K01648] [EC:2.3.3.8]
115712747  ATP-citrate synthase alpha chain protein 1 [KO:K01648] [EC:2.3.3.8]
115724085  ATP-citrate synthase beta chain protein 2 [KO:K01648] [EC:2.3.3.8]
115699691  aconitate hydratase, cytoplasmic [KO:K01681] [EC:4.2.1.3]
115712750  aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
115722083  isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
115699741  isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
115705560  cytosolic isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
115723005  isocitrate dehydrogenase [NAD] catalytic subunit 5, mitochondrial [KO:K00030] [EC:1.1.1.41]
115702598  isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial [KO:K00030] [EC:1.1.1.41]
115709312  isocitrate dehydrogenase [NAD] catalytic subunit 5, mitochondrial [KO:K00030] [EC:1.1.1.41]
115709779  isocitrate dehydrogenase [NAD] catalytic subunit 5, mitochondrial [KO:K00030] [EC:1.1.1.41]
115713940  LOW QUALITY PROTEIN: 2-oxoglutarate dehydrogenase, mitochondrial-like [KO:K00164] [EC:1.2.4.2]
115708090  2-oxoglutarate dehydrogenase, mitochondrial [KO:K00164] [EC:1.2.4.2]
115713017  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 1, mitochondrial [KO:K00658] [EC:2.3.1.61]
115722513  dihydrolipoyl dehydrogenase, mitochondrial [KO:K00382] [EC:1.8.1.4]
115722255  dihydrolipoyl dehydrogenase 2, chloroplastic [KO:K00382] [EC:1.8.1.4]
115723412  dihydrolipoyl dehydrogenase, mitochondrial [KO:K00382] [EC:1.8.1.4]
115699763  succinate--CoA ligase [ADP-forming] subunit alpha, mitochondrial [KO:K01899] [EC:6.2.1.4 6.2.1.5]
115712880  succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
115714402  succinate dehydrogenase [ubiquinone] flavoprotein subunit 1, mitochondrial [KO:K00234] [EC:1.3.5.1]
115713489  succinate dehydrogenase [ubiquinone] iron-sulfur subunit 3, mitochondrial [KO:K00235] [EC:1.3.5.1]
115698734  succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial [KO:K00235] [EC:1.3.5.1]
115719470  succinate dehydrogenase subunit 3-1, mitochondrial [KO:K00236]
27215495  sdh3; succinate dehydrogenase subunit 3 [KO:K00236]
27215460  sdh4; succinate dehydrogenase subunit 4 [KO:K25801]
115709946  fumarate hydratase 1, mitochondrial [KO:K01679] [EC:4.2.1.2]
115708841  malate dehydrogenase, cytoplasmic [KO:K00025] [EC:1.1.1.37]
115723449  malate dehydrogenase [KO:K00025] [EC:1.1.1.37]
115704224  malate dehydrogenase, glyoxysomal [KO:K00026] [EC:1.1.1.37]
115697281  malate dehydrogenase 1, mitochondrial [KO:K00026] [EC:1.1.1.37]
115712229  malate dehydrogenase, glyoxysomal [KO:K00026] [EC:1.1.1.37]
115723265  malate dehydrogenase, chloroplastic [KO:K00026] [EC:1.1.1.37]
115706808  phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
115712620  phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
115704842  LOW QUALITY PROTEIN: pyruvate dehydrogenase E1 component subunit alpha-3, chloroplastic-like [KO:K00161] [EC:1.2.4.1]
115708323  pyruvate dehydrogenase E1 component subunit alpha-3, chloroplastic [KO:K00161] [EC:1.2.4.1]
115712627  pyruvate dehydrogenase E1 component subunit alpha-1, mitochondrial [KO:K00161] [EC:1.2.4.1]
115702228  pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial [KO:K00162] [EC:1.2.4.1]
115696871  pyruvate dehydrogenase E1 component subunit beta-3, chloroplastic [KO:K00162] [EC:1.2.4.1]
115699172  dihydrolipoyllysine-residue acetyltransferase component 4 of pyruvate dehydrogenase complex, chloroplastic [KO:K00627] [EC:2.3.1.12]
115706093  dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex, mitochondrial [KO:K00627] [EC:2.3.1.12]
115707018  dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex, mitochondrial isoform X1 [KO:K00627] [EC:2.3.1.12]
115723768  dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex, chloroplastic [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
csav00010  Glycolysis / Gluconeogenesis
csav00053  Ascorbate and aldarate metabolism
csav00061  Fatty acid biosynthesis
csav00062  Fatty acid elongation
csav00071  Fatty acid degradation
csav00190  Oxidative phosphorylation
csav00220  Arginine biosynthesis
csav00250  Alanine, aspartate and glutamate metabolism
csav00280  Valine, leucine and isoleucine degradation
csav00350  Tyrosine metabolism
csav00470  D-Amino acid metabolism
csav00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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