KEGG   PATHWAY: csci00240
Entry
csci00240                   Pathway                                
Name
Pyrimidine metabolism - Clostridium scindens
Class
Metabolism; Nucleotide metabolism
Pathway map
csci00240  Pyrimidine metabolism
csci00240

Module
csci_M00051  De novo pyrimidine biosynthesis, glutamine (+ PRPP) => UMP [PATH:csci00240]
Other DBs
GO: 0006220 0006213
Organism
Clostridium scindens [GN:csci]
Gene
HDCHBGLK_02758  carB_2; Carbamoyl-phosphate synthase large chain [KO:K01955] [EC:6.3.5.5]
HDCHBGLK_01948  carB_1; Carbamoyl-phosphate synthase large chain [KO:K01955] [EC:6.3.5.5]
HDCHBGLK_02757  carA; Carbamoyl-phosphate synthase small chain [KO:K01956] [EC:6.3.5.5]
HDCHBGLK_02871  pyrB; Aspartate carbamoyltransferase catalytic subunit [KO:K00609] [EC:2.1.3.2]
HDCHBGLK_02870  pyrI; Aspartate carbamoyltransferase regulatory chain [KO:K00610]
HDCHBGLK_02207  pyrC; Dihydroorotase [KO:K01465] [EC:3.5.2.3]
HDCHBGLK_02210  pyrD; Dihydroorotate dehydrogenase B (NAD(+)), catalytic subunit [KO:K17828] [EC:1.3.1.14]
HDCHBGLK_02209  pyrK; Dihydroorotate dehydrogenase B (NAD(+)), electron transfer subunit [KO:K02823]
HDCHBGLK_02211  pyrE_1; Orotate phosphoribosyltransferase [KO:K00762] [EC:2.4.2.10]
HDCHBGLK_02208  pyrF; Orotidine 5'-phosphate decarboxylase [KO:K01591] [EC:4.1.1.23]
HDCHBGLK_02748  pyrH; Uridylate kinase [KO:K09903] [EC:2.7.4.22]
HDCHBGLK_03728  Aspartate kinase [KO:K09903] [EC:2.7.4.22]
HDCHBGLK_03089  maf; Septum formation protein Maf [KO:K06287] [EC:3.6.1.-]
HDCHBGLK_00054  pyrG; CTP synthase [KO:K01937] [EC:6.3.4.2]
HDCHBGLK_03208  cmk_6; Cytidylate kinase [KO:K00945] [EC:2.7.4.25]
HDCHBGLK_02812  udk; Uridine kinase [KO:K00876] [EC:2.7.1.48]
HDCHBGLK_01531  surE; 5'-nucleotidase SurE [KO:K03787] [EC:3.1.3.5 3.1.3.6]
HDCHBGLK_02843  udp; Uridine phosphorylase [KO:K00757] [EC:2.4.2.3]
HDCHBGLK_01035  upp; Uracil phosphoribosyltransferase [KO:K00761] [EC:2.4.2.9]
HDCHBGLK_00483  psuG; Pseudouridine-5'-phosphate glycosidase [KO:K16329] [EC:4.2.1.70]
HDCHBGLK_02846  cdd; Cytidine deaminase [KO:K01489] [EC:3.5.4.5]
HDCHBGLK_00249  nrdD_1; Anaerobic ribonucleoside-triphosphate reductase [KO:K21636] [EC:1.1.98.6]
HDCHBGLK_00956  nrdD_2; Anaerobic ribonucleoside-triphosphate reductase [KO:K21636] [EC:1.1.98.6]
HDCHBGLK_02477  nrdE1; Ribonucleoside-diphosphate reductase subunit alpha 1 [KO:K00525] [EC:1.17.4.1]
HDCHBGLK_02478  nrdB; Ribonucleoside-diphosphate reductase subunit beta [KO:K00526] [EC:1.17.4.1]
HDCHBGLK_01034  tadA_2; tRNA-specific adenosine deaminase [KO:K01493] [EC:3.5.4.12]
HDCHBGLK_03294  dut_2; Deoxyuridine 5'-triphosphate nucleotidohydrolase [KO:K01520] [EC:3.6.1.23]
HDCHBGLK_00858  dut_1; Deoxyuridine 5'-triphosphate nucleotidohydrolase [KO:K01520] [EC:3.6.1.23]
HDCHBGLK_03398  thyA1; Thymidylate synthase 1 [KO:K00560] [EC:2.1.1.45]
HDCHBGLK_00857  thyX; Thymidylate synthase ThyX [KO:K03465] [EC:2.1.1.148]
HDCHBGLK_02488  D-hydantoinase [KO:K01464] [EC:3.5.2.2]
Compound
C00015  UDP
C00039  DNA
C00046  RNA
C00055  CMP
C00063  CTP
C00064  L-Glutamine
C00075  UTP
C00086  Urea
C00099  beta-Alanine
C00105  UMP
C00106  Uracil
C00112  CDP
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00169  Carbamoyl phosphate
C00178  Thymine
C00214  Thymidine
C00222  3-Oxopropanoate
C00239  dCMP
C00295  Orotate
C00299  Uridine
C00337  (S)-Dihydroorotate
C00363  dTDP
C00364  dTMP
C00365  dUMP
C00380  Cytosine
C00383  Malonate
C00429  5,6-Dihydrouracil
C00438  N-Carbamoyl-L-aspartate
C00458  dCTP
C00459  dTTP
C00460  dUTP
C00475  Cytidine
C00526  Deoxyuridine
C00672  2-Deoxy-D-ribose 1-phosphate
C00705  dCDP
C00813  Barbiturate
C00881  Deoxycytidine
C00941  3',5'-Cyclic CMP
C01013  3-Hydroxypropanoate
C01103  Orotidine 5'-phosphate
C01168  Pseudouridine 5'-phosphate
C01205  (R)-3-Amino-2-methylpropanoate
C01346  dUDP
C01368  3'-UMP
C01563  Carbamate
C02067  Pseudouridine
C02170  Methylmalonate
C02354  2',3'-Cyclic CMP
C02355  2',3'-Cyclic UMP
C02376  5-Methylcytosine
C02642  3-Ureidopropionate
C03997  5-Hydroxymethyldeoxycytidylate
C05281  5-Methylbarbiturate
C05822  3'-CMP
C06198  P1,P4-Bis(5'-uridyl) tetraphosphate
C11038  2'-Deoxy-5-hydroxymethylcytidine-5'-diphosphate
C11039  2'-Deoxy-5-hydroxymethylcytidine-5'-triphosphate
C15607  3-Oxo-3-ureidopropanoate
C20231  (Z)-3-Ureidoacrylate peracid
C20249  (Z)-3-Peroxyaminoacrylate
C20253  Aminoacrylate
C20254  Ureidoacrylate
C20846  3-Oxo-3-ureidoisobutyrate
C21028  (R)-5,6-Dihydrothymine
C21029  (R)-3-Ureidoisobutyrate
C22509  3',5'-Cyclic UMP
Related
pathway
csci00030  Pentose phosphate pathway
csci00220  Arginine biosynthesis
csci00250  Alanine, aspartate and glutamate metabolism
csci00280  Valine, leucine and isoleucine degradation
csci00410  beta-Alanine metabolism
KO pathway
ko00240   
LinkDB

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