KEGG   PATHWAY: cser00020
Entry
cser00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Comamonas serinivorans
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
cser00020  Citrate cycle (TCA cycle)
cser00020

Module
cser_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:cser00020]
cser_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:cser00020]
cser_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:cser00020]
Other DBs
GO: 0006099
Organism
Comamonas serinivorans [GN:cser]
Gene
CCO03_12970  citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
CCO03_15180  hypothetical protein [KO:K01647] [EC:2.3.3.1]
CCO03_14095  acnA; aconitate hydratase [KO:K01681] [EC:4.2.1.3]
CCO03_12920  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
CCO03_13890  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
CCO03_06255  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
CCO03_06265  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
CCO03_10890  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
CCO03_00295  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
CCO03_00290  succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
CCO03_00060  propionyl-CoA--succinate CoA transferase [KO:K18118] [EC:2.8.3.18]
CCO03_12955  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
CCO03_12960  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
CCO03_12945  succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
CCO03_12950  succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
CCO03_10530  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
CCO03_11055  fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
CCO03_12935  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
CCO03_05880  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
CCO03_01230  phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
CCO03_08255  pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
CCO03_08260  dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
cser00010  Glycolysis / Gluconeogenesis
cser00053  Ascorbate and aldarate metabolism
cser00061  Fatty acid biosynthesis
cser00071  Fatty acid degradation
cser00190  Oxidative phosphorylation
cser00220  Arginine biosynthesis
cser00250  Alanine, aspartate and glutamate metabolism
cser00280  Valine, leucine and isoleucine degradation
cser00350  Tyrosine metabolism
cser00470  D-Amino acid metabolism
cser00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

DBGET integrated database retrieval system