KEGG   PATHWAY: csol00020
Entry
csol00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Ceratosolen solmsi marchali (fig wasp)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
csol00020  Citrate cycle (TCA cycle)
csol00020

Module
csol_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:csol00020]
csol_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:csol00020]
csol_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:csol00020]
csol_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:csol00020]
Other DBs
GO: 0006099
Organism
Ceratosolen solmsi marchali (fig wasp) [GN:csol]
Gene
105360228  probable citrate synthase 2, mitochondrial [KO:K01647] [EC:2.3.3.1]
105362644  citrate synthase, mitochondrial-like isoform X1 [KO:K01647] [EC:2.3.3.1]
105361316  ATP-citrate synthase [KO:K01648] [EC:2.3.3.8]
105362114  aconitate hydratase, mitochondrial-like [KO:K01681] [EC:4.2.1.3]
105368006  cytoplasmic aconitate hydratase-like isoform X1 [KO:K01681] [EC:4.2.1.3]
105368315  isocitrate dehydrogenase [NADP] cytoplasmic [KO:K00031] [EC:1.1.1.42]
105359917  LOW QUALITY PROTEIN: isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial-like [KO:K00030] [EC:1.1.1.41]
105361700  isocitrate dehydrogenase [NAD] subunit beta, mitochondrial [KO:K00030] [EC:1.1.1.41]
105366103  probable isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial [KO:K00030] [EC:1.1.1.41]
105362852  2-oxoglutarate dehydrogenase, mitochondrial isoform X1 [KO:K00164] [EC:1.2.4.2]
105365231  2-oxoglutarate dehydrogenase, mitochondrial-like [KO:K00164] [EC:1.2.4.2]
105367357  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial [KO:K00658] [EC:2.3.1.61]
105360604  dihydrolipoyl dehydrogenase, mitochondrial [KO:K00382] [EC:1.8.1.4]
105364708  succinyl-CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial [KO:K01899] [EC:6.2.1.4 6.2.1.5]
105367937  succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial isoform X1 [KO:K01900] [EC:6.2.1.4 6.2.1.5]
105362157  succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
105366575  succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial [KO:K00234] [EC:1.3.5.1]
105365893  succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial-like [KO:K00235] [EC:1.3.5.1]
105363600  succinate dehydrogenase cytochrome b560 subunit, mitochondrial-like [KO:K00236]
105366078  putative succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial [KO:K00237]
105363203  fumarate hydratase, mitochondrial-like isoform X1 [KO:K01679] [EC:4.2.1.2]
105360230  malate dehydrogenase, cytoplasmic [KO:K00025] [EC:1.1.1.37]
105366728  LOW QUALITY PROTEIN: malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
105364641  malate dehydrogenase, mitochondrial-like [KO:K00026] [EC:1.1.1.37]
105366780  probable malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
105368272  LOW QUALITY PROTEIN: pyruvate carboxylase, mitochondrial [KO:K01958] [EC:6.4.1.1]
105360529  phosphoenolpyruvate carboxykinase [GTP]-like [KO:K01596] [EC:4.1.1.32]
105368462  probable pyruvate dehydrogenase E1 component subunit alpha, mitochondrial [KO:K00161] [EC:1.2.4.1]
105365036  pyruvate dehydrogenase E1 component subunit alpha, mitochondrial-like [KO:K00161] [EC:1.2.4.1]
105362129  pyruvate dehydrogenase E1 component subunit beta, mitochondrial-like [KO:K00162] [EC:1.2.4.1]
105364193  pyruvate dehydrogenase E1 component subunit beta, mitochondrial-like [KO:K00162] [EC:1.2.4.1]
105362048  dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
csol00010  Glycolysis / Gluconeogenesis
csol00053  Ascorbate and aldarate metabolism
csol00061  Fatty acid biosynthesis
csol00062  Fatty acid elongation
csol00071  Fatty acid degradation
csol00190  Oxidative phosphorylation
csol00220  Arginine biosynthesis
csol00250  Alanine, aspartate and glutamate metabolism
csol00280  Valine, leucine and isoleucine degradation
csol00350  Tyrosine metabolism
csol00470  D-Amino acid metabolism
csol00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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