KEGG   PATHWAY: csx00020
Entry
csx00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Corynebacterium singulare
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
csx00020  Citrate cycle (TCA cycle)
csx00020

Module
csx_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:csx00020]
csx_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:csx00020]
csx_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:csx00020]
csx_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:csx00020]
csx_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:csx00020]
Other DBs
GO: 0006099
Organism
Corynebacterium singulare [GN:csx]
Gene
CSING_04320  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
CSING_06810  acn; aconitase [KO:K01681] [EC:4.2.1.3]
CSING_02930  icd; isocitrate dehydrogenase, NADP-dependent, monomeric type [KO:K00031] [EC:1.1.1.42]
CSING_05545  odhA; 2-oxoglutarate dehydrogenase, E1 component [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
CSING_01495  lpd; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
CSING_11110  cat1; succinate CoA transferase [KO:K18118] [EC:2.8.3.18]
CSING_01510  sdhA; succinate dehydrogenase subunit A [KO:K00239] [EC:1.3.5.1]
CSING_01515  succinate dehydrogenase subunit B [KO:K00240] [EC:1.3.5.1]
CSING_01505  sdhC; succinate dehydrogenase subunit C [KO:K00241]
CSING_05165  fumC; fumarase, class II [KO:K01679] [EC:4.2.1.2]
CSING_10430  mdh; malate dehydrogenase (NAD) [KO:K00024] [EC:1.1.1.37]
CSING_08400  mqo; malate:quinone-oxidoreductase [KO:K00116] [EC:1.1.5.4]
CSING_03025  pyc-1; pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
CSING_12280  pckG; phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
CSING_09625  aceE; pyruvate dehydrogenase E1 component, homodimeric type [KO:K00163] [EC:1.2.4.1]
CSING_09280  sucB; 2-oxoglutarate dehydrogenase E2 component [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
csx00010  Glycolysis / Gluconeogenesis
csx00061  Fatty acid biosynthesis
csx00071  Fatty acid degradation
csx00190  Oxidative phosphorylation
csx00220  Arginine biosynthesis
csx00250  Alanine, aspartate and glutamate metabolism
csx00280  Valine, leucine and isoleucine degradation
csx00350  Tyrosine metabolism
csx00470  D-Amino acid metabolism
csx00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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