KEGG   PATHWAY: ctai00020
Entry
ctai00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Chryseobacterium taihuense
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
ctai00020  Citrate cycle (TCA cycle)
ctai00020

Module
ctai_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:ctai00020]
ctai_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:ctai00020]
ctai_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:ctai00020]
ctai_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:ctai00020]
ctai_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:ctai00020]
Other DBs
GO: 0006099
Organism
Chryseobacterium taihuense [GN:ctai]
Gene
NCTC12078_01758  gltA2; Citrate synthase 1 [KO:K01647] [EC:2.3.3.1]
NCTC12078_01988  acn; Aconitate hydratase precursor [KO:K01681] [EC:4.2.1.3]
NCTC12078_01987  acnB; Aconitate hydratase 2 [KO:K01682] [EC:4.2.1.3 4.2.1.99]
NCTC12078_02634  icd_2; Isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
NCTC12078_00074  icd_1; Isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
NCTC12078_00956  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
NCTC12078_00955  sucB; Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
NCTC12078_01099  pdhC_2; Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
NCTC12078_02998  Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
NCTC12078_00224  Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
NCTC12078_00244  pdhD; Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
NCTC12078_01290  sucD; Succinyl-CoA ligase [ADP-forming] subunit alpha [KO:K01902] [EC:6.2.1.5]
NCTC12078_01519  sucC; Succinyl-CoA ligase [ADP-forming] subunit beta [KO:K01903] [EC:6.2.1.5]
NCTC12078_02845  frdA; Fumarate reductase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
NCTC12078_02846  frdB_2; Fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
NCTC12078_00286  frdB_1; Fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
NCTC12078_02844  succinate dehydrogenase (or fumarate reductase) cytochrome b subunit, b558 family [KO:K00241]
NCTC12078_02140  fumA; Fumarate hydratase class I, aerobic [KO:K01676] [EC:4.2.1.2]
NCTC12078_02139  fumC; Fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
NCTC12078_00059  mdh; Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
NCTC12078_01858  pckA; Phosphoenolpyruvate carboxykinase [ATP] [KO:K01610] [EC:4.1.1.49]
NCTC12078_00765  acoA; Acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit alpha [KO:K00161] [EC:1.2.4.1]
NCTC12078_01389  bfmBAB_2; 2-oxoisovalerate dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
NCTC12078_00764  pdhC_1; Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
ctai00010  Glycolysis / Gluconeogenesis
ctai00053  Ascorbate and aldarate metabolism
ctai00061  Fatty acid biosynthesis
ctai00071  Fatty acid degradation
ctai00190  Oxidative phosphorylation
ctai00220  Arginine biosynthesis
ctai00250  Alanine, aspartate and glutamate metabolism
ctai00280  Valine, leucine and isoleucine degradation
ctai00350  Tyrosine metabolism
ctai00470  D-Amino acid metabolism
ctai00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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