KEGG   PATHWAY: cthr04141
Entry
cthr04141                   Pathway                                
Name
Protein processing in endoplasmic reticulum - Thermochaetoides thermophila
Description
The endoplasmic reticulum (ER) is a subcellular organelle where proteins are folded with the help of lumenal chaperones. Newly synthesized peptides enter the ER via the sec61 pore and are glycosylated. Correctly folded proteins are packaged into transport vesicles that shuttle them to the Golgi complex. Misfolded proteins are retained within the ER lumen in complex with molecular chaperones. Proteins that are terminally misfolded bind to BiP and are directed toward degradation through the proteasome in a process called ER-associated degradation (ERAD). Accumulation of misfolded proteins in the ER causes ER stress and activates a signaling pathway called the unfolded protein response (UPR). In certain severe situations, however, the protective mechanisms activated by the UPR are not sufficient to restore normal ER function and cells die by apoptosis.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
cthr04141  Protein processing in endoplasmic reticulum
cthr04141

Other DBs
GO: 0030433 0034976
Organism
Thermochaetoides thermophila [GN:cthr]
Gene
CTHT_0069570  hypothetical protein [KO:K10956]
CTHT_0056870  hypothetical protein [KO:K09481]
CTHT_0061700  hypothetical protein [KO:K07342]
CTHT_0038490  hypothetical protein [KO:K12275]
CTHT_0070160  hypothetical protein [KO:K09540]
CTHT_0057180  dolichyl-diphosphooligosaccharide-protein glycosyltransferase subunit-like protein [KO:K12666]
CTHT_0056540  oligosaccharyltransferase subunit-like protein [KO:K12667]
CTHT_0067430  epsilon subunit-like protein [KO:K12668]
CTHT_0045210  gamma subunit-like protein [KO:K12669]
CTHT_0008130  oligosaccharyl transferase-like protein [KO:K12670]
CTHT_0009650  ribosomal protein L35-like protein [KO:K07151] [EC:2.4.99.18]
CTHT_0061620  hypothetical protein [KO:K01228] [EC:3.2.1.106]
CTHT_0009150  hypothetical protein [KO:K14001]
CTHT_0015230  heat shock protein 70-like protein [KO:K09486]
CTHT_0044200  hypothetical protein [KO:K09490] [EC:3.6.4.10]
CTHT_0048310  hypothetical protein [KO:K09523]
CTHT_0063730  hypothetical protein [KO:K14002]
CTHT_0064960  alpha glucosidase-like protein [KO:K05546] [EC:3.2.1.207]
CTHT_0046400  glucosidase 2 subunit beta-like protein [KO:K08288]
CTHT_0053590  hypothetical protein [KO:K08054]
CTHT_0050430  hypothetical protein [KO:K01230] [EC:3.2.1.113]
CTHT_0016550  hypothetical protein [KO:K01230] [EC:3.2.1.113]
CTHT_0068950  alpha-mannosidase-like protein [KO:K01230] [EC:3.2.1.113]
CTHT_0060640  hypothetical protein [KO:K01230] [EC:3.2.1.113]
CTHT_0054060  mannosyl-oligosaccharide 1,2-alpha-mannosidase-like protein [KO:K23741] [EC:3.2.1.209]
CTHT_0023750  hypothetical protein [KO:K10082]
CTHT_0024750  hypothetical protein [KO:K10080]
CTHT_0041110  hypothetical protein [KO:K14004]
CTHT_0002660  hypothetical protein [KO:K14005]
CTHT_0066370  hypothetical protein [KO:K14006]
CTHT_0017030  putative ER to golgi transport protein [KO:K14007]
CTHT_0048450  hypothetical protein [KO:K14007]
CTHT_0048990  UDP-glucose-glycoprotein glucosyltransferase-like protein [KO:K11718] [EC:2.4.1.-]
CTHT_0067360  hypothetical protein [KO:K09580] [EC:5.3.4.1]
CTHT_0055600  hypothetical protein [KO:K09584] [EC:5.3.4.1]
CTHT_0065740  hypothetical protein [KO:K09584] [EC:5.3.4.1]
CTHT_0038460  hypothetical protein [KO:K13996] [EC:5.3.4.1]
CTHT_0058530  hypothetical protein [KO:K10976] [EC:1.8.4.-]
CTHT_0000800  hypothetical protein [KO:K10088]
CTHT_0058330  hypothetical protein [KO:K14009]
CTHT_0023900  putative endoplasmic reticulum protein [KO:K13989]
CTHT_0066540  hypothetical protein [KO:K13989]
CTHT_0069140  hypothetical protein [KO:K14012]
CTHT_0027280  putative cell division control protein [KO:K13525]
CTHT_0009420  hypothetical protein [KO:K14015]
CTHT_0006190  putative ubiquitin fusion degradation protein [KO:K14016]
CTHT_0007430  heat shock protein 70-like protein [KO:K03283]
CTHT_0058460  hypothetical protein [KO:K03283]
CTHT_0026990  hypothetical protein [KO:K09503]
CTHT_0067190  mitochondrial protein import protein mas5-like protein [KO:K09503]
CTHT_0001630  hypothetical protein [KO:K09518]
CTHT_0068330  heat shock protein hsp90-like protein [KO:K04079]
CTHT_0062080  putative nucleotide exchange factor [KO:K09562]
CTHT_0048930  hypothetical protein [KO:K13719] [EC:3.1.2.-]
CTHT_0004050  putative ubiquitin binding protein [KO:K14018]
CTHT_0025730  putative excision repair protein [KO:K10839]
CTHT_0058630  ubiquitin-like protein [KO:K04523]
CTHT_0058390  hypothetical protein [KO:K01456] [EC:3.5.1.52]
CTHT_0001560  putative ubiquitin fusion degradation protein [KO:K10597] [EC:2.3.2.27]
CTHT_0032740  translation initiation factor 2 alpha subunit-like protein [KO:K03237]
CTHT_0000300  hypothetical protein [KO:K08852] [EC:2.7.11.1 3.1.26.-]
CTHT_0040090  hypothetical protein [KO:K10661] [EC:2.3.2.27]
CTHT_0066150  ubiquitin conjugating enzyme-like protein [KO:K10578] [EC:2.3.2.23]
CTHT_0046550  hypothetical protein [KO:K04554] [EC:2.3.2.23]
CTHT_0035290  ubiquitin conjugating enzyme-like protein [KO:K10575] [EC:2.3.2.23]
CTHT_0065240  putative ubiquitin carrier protein [KO:K04555] [EC:2.3.2.23]
CTHT_0033060  hypothetical protein [KO:K14022]
CTHT_0068020  hypothetical protein [KO:K10601] [EC:2.3.2.27]
CTHT_0054870  ubiquitin-protein ligase-like protein [KO:K14026]
CTHT_0036200  hypothetical protein [KO:K09561] [EC:2.3.2.27]
CTHT_0016670  putative ubiquitin protein [KO:K06689] [EC:2.3.2.23]
CTHT_0023610  hypothetical protein [KO:K03868] [EC:2.3.2.32]
CTHT_0039150  ubiquitin-protein ligase-like protein [KO:K03347]
CTHT_0027110  hypothetical protein [KO:K03094]
Compound
C00076  Calcium cation
G00009   
G00010   
G00011   
G00012   
G10694   
Reference
  Authors
Naidoo N
  Title
ER and aging-Protein folding and the ER stress response.
  Journal
Ageing Res Rev 8:150-9 (2009)
DOI:10.1016/j.arr.2009.03.001
Reference
  Authors
Malhotra JD, Kaufman RJ
  Title
The endoplasmic reticulum and the unfolded protein response.
  Journal
Semin Cell Dev Biol 18:716-31 (2007)
DOI:10.1016/j.semcdb.2007.09.003
Reference
  Authors
Maattanen P, Gehring K, Bergeron JJ, Thomas DY
  Title
Protein quality control in the ER: the recognition of misfolded proteins.
  Journal
Semin Cell Dev Biol 21:500-11 (2010)
DOI:10.1016/j.semcdb.2010.03.006
Reference
  Authors
Stolz A, Wolf DH
  Title
Endoplasmic reticulum associated protein degradation: a chaperone assisted journey to hell.
  Journal
Biochim Biophys Acta 1803:694-705 (2010)
DOI:10.1016/j.bbamcr.2010.02.005
Reference
  Authors
Dejgaard K, Theberge JF, Heath-Engel H, Chevet E, Tremblay ML, Thomas DY
  Title
Organization of the Sec61 translocon, studied by high resolution native electrophoresis.
  Journal
J Proteome Res 9:1763-71 (2010)
DOI:10.1021/pr900900x
Related
pathway
cthr00510  N-Glycan biosynthesis
cthr03050  Proteasome
cthr03060  Protein export
KO pathway
ko04141   
LinkDB

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