KEGG   PATHWAY: ctrl00020
Entry
ctrl00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Chlamydia trachomatis L2b/LST
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
ctrl00020  Citrate cycle (TCA cycle)
ctrl00020

Module
ctrl_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:ctrl00020]
ctrl_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:ctrl00020]
Other DBs
GO: 0006099
Organism
Chlamydia trachomatis L2b/LST [GN:ctrl]
Gene
L2BLST_00056  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
L2BLST_00057  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
L2BLST_00414  branched-chain alpha-keto acid dehydrogenase subunit E2 [KO:K00658] [EC:2.3.1.61]
L2BLST_00584  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
L2BLST_00875  succinyl-CoA synthetase subunit alpha [KO:K01902] [EC:6.2.1.5]
L2BLST_00874  succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
L2BLST_00619  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
L2BLST_00618  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
L2BLST_00620  Succinate dehydrogenase/fumarate reductase, cytochrome b subunit [KO:K00241]
L2BLST_00912  fumarate hydratase [KO:K01679] [EC:4.2.1.2]
L2BLST_00389  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
L2BLST_00750  phosphoenolpyruvate carboxykinase [KO:K01596] [EC:4.1.1.32]
L2BLST_00250  hypothetical protein [KO:K00161] [EC:1.2.4.1]
L2BLST_00251  pyruvate dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
L2BLST_00252  branched-chain alpha-keto acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
ctrl00010  Glycolysis / Gluconeogenesis
ctrl00061  Fatty acid biosynthesis
ctrl00190  Oxidative phosphorylation
ctrl00250  Alanine, aspartate and glutamate metabolism
ctrl00280  Valine, leucine and isoleucine degradation
ctrl00470  D-Amino acid metabolism
ctrl00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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