KEGG   PATHWAY: ctur00020
Entry
ctur00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Chryseobacterium sp. C-71
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
ctur00020  Citrate cycle (TCA cycle)
ctur00020

Module
ctur_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:ctur00020]
ctur_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:ctur00020]
ctur_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:ctur00020]
ctur_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:ctur00020]
ctur_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:ctur00020]
Other DBs
GO: 0006099
Organism
Chryseobacterium sp. C-71 [GN:ctur]
Gene
LNP04_13575  citrate synthase [KO:K01647] [EC:2.3.3.1]
LNP04_09825  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
LNP04_09820  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
LNP04_04285  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
LNP04_03255  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
LNP04_03195  2-oxo acid dehydrogenase subunit E2 [KO:K00658] [EC:2.3.1.61]
LNP04_03250  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
LNP04_03485  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
LNP04_18030  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
LNP04_06175  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
LNP04_14565  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
LNP04_08610  fumarate reductase/succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
LNP04_08605  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
LNP04_08615  succinate dehydrogenase cytochrome b subunit [KO:K00241]
LNP04_10195  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
LNP04_10200  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
LNP04_05945  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
LNP04_06515  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
LNP04_13075  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
LNP04_02585  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
LNP04_14980  pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
LNP04_02580  2-oxo acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
ctur00010  Glycolysis / Gluconeogenesis
ctur00053  Ascorbate and aldarate metabolism
ctur00061  Fatty acid biosynthesis
ctur00071  Fatty acid degradation
ctur00190  Oxidative phosphorylation
ctur00220  Arginine biosynthesis
ctur00250  Alanine, aspartate and glutamate metabolism
ctur00280  Valine, leucine and isoleucine degradation
ctur00350  Tyrosine metabolism
ctur00470  D-Amino acid metabolism
ctur00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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