KEGG   PATHWAY: cul00020
Entry
cul00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Corynebacterium ulcerans BR-AD22
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
cul00020  Citrate cycle (TCA cycle)
cul00020

Module
cul_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:cul00020]
cul_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:cul00020]
cul_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:cul00020]
cul_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:cul00020]
cul_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:cul00020]
Other DBs
GO: 0006099
Organism
Corynebacterium ulcerans BR-AD22 [GN:cul]
Gene
CULC22_00656  gltA; Citrate synthase [KO:K01647] [EC:2.3.3.1]
CULC22_01150  acn; aconitase [KO:K01681] [EC:4.2.1.3]
CULC22_00510  icd; isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
CULC22_00859  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
CULC22_00287  lpd; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
CULC22_01882  cat; succinyl-CoA:Coenzyme A transferase [KO:K18118] [EC:2.8.3.18]
CULC22_00290  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
CULC22_00291  sdhB; succinate dehydrogenase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
CULC22_00289  sdhC; succinate dehydrogenase subunit [KO:K00241]
CULC22_00795  fum; Fumarase [KO:K01679] [EC:4.2.1.2]
CULC22_01752  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
CULC22_01402  mqo; malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
CULC22_00529  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
CULC22_02177  pckA; phosphoenolpyruvate carboxykinase [KO:K01596] [EC:4.1.1.32]
CULC22_01599  aceE; pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
CULC22_01554  sucB; dihydrolipoamide acyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
cul00010  Glycolysis / Gluconeogenesis
cul00053  Ascorbate and aldarate metabolism
cul00061  Fatty acid biosynthesis
cul00071  Fatty acid degradation
cul00190  Oxidative phosphorylation
cul00220  Arginine biosynthesis
cul00250  Alanine, aspartate and glutamate metabolism
cul00280  Valine, leucine and isoleucine degradation
cul00350  Tyrosine metabolism
cul00470  D-Amino acid metabolism
cul00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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