KEGG   PATHWAY: daz00020
Entry
daz00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Drosophila arizonae
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
daz00020  Citrate cycle (TCA cycle)
daz00020

Module
daz_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:daz00020]
daz_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:daz00020]
daz_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:daz00020]
daz_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:daz00020]
daz_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:daz00020]
Other DBs
GO: 0006099
Organism
Drosophila arizonae [GN:daz]
Gene
108619500  probable citrate synthase, mitochondrial isoform X1 [KO:K01647] [EC:2.3.3.1]
108615968  ATP-citrate synthase isoform X1 [KO:K01648] [EC:2.3.3.8]
108621832  probable aconitate hydratase, mitochondrial [KO:K01681] [EC:4.2.1.3]
108610717  probable aconitate hydratase, mitochondrial [KO:K01681] [EC:4.2.1.3]
108621122  cytoplasmic aconitate hydratase [KO:K01681] [EC:4.2.1.3]
108613910  isocitrate dehydrogenase [NADP] cytoplasmic isoform X1 [KO:K00031] [EC:1.1.1.42]
108613269  probable isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial isoform X1 [KO:K00030] [EC:1.1.1.41]
108615070  probable isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial [KO:K00030] [EC:1.1.1.41]
108614019  probable isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial [KO:K00030] [EC:1.1.1.41]
108619011  probable isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial isoform X1 [KO:K00030] [EC:1.1.1.41]
108608763  isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial [KO:K00030] [EC:1.1.1.41]
108620229  isocitrate dehydrogenase [NAD] subunit beta, mitochondrial [KO:K00030] [EC:1.1.1.41]
108616768  isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial [KO:K00030] [EC:1.1.1.41]
108614063  2-oxoglutarate dehydrogenase, mitochondrial [KO:K00164] [EC:1.2.4.2]
108614133  2-oxoglutarate dehydrogenase-like, mitochondrial isoform X1 [KO:K00164] [EC:1.2.4.2]
108616331  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial [KO:K00658] [EC:2.3.1.61]
108616342  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial-like [KO:K00658] [EC:2.3.1.61]
108614286  dihydrolipoyl dehydrogenase, mitochondrial [KO:K00382] [EC:1.8.1.4]
108614104  succinyl-CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial [KO:K01899] [EC:6.2.1.4 6.2.1.5]
108619374  succinyl-CoA ligase subunit alpha, mitochondrial [KO:K01899] [EC:6.2.1.4 6.2.1.5]
108613510  succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
108608747  succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial isoform X1 [KO:K01900] [EC:6.2.1.4 6.2.1.5]
108616144  succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial [KO:K00234] [EC:1.3.5.1]
108617140  succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial [KO:K00235] [EC:1.3.5.1]
108619426  succinate dehydrogenase [ubiquinone] iron-sulfur subunit isoform X1 [KO:K00235] [EC:1.3.5.1]
108621837  succinate dehydrogenase cytochrome b560 subunit, mitochondrial [KO:K00236]
108609218  uncharacterized protein LOC108609218 [KO:K00236]
108621084  succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial [KO:K00237]
108614122  fumarate hydratase, mitochondrial-like [KO:K01679] [EC:4.2.1.2]
108614125  probable fumarate hydratase, mitochondrial [KO:K01679] [EC:4.2.1.2]
108619696  fumarate hydratase, mitochondrial-like [KO:K01679] [EC:4.2.1.2]
108619698  fumarate hydratase, mitochondrial isoform X1 [KO:K01679] [EC:4.2.1.2]
108609696  malate dehydrogenase, cytoplasmic [KO:K00025] [EC:1.1.1.37]
108619350  malate dehydrogenase-like isoform X1 [KO:K00026] [EC:1.1.1.37]
108619009  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
108615175  pyruvate carboxylase, mitochondrial-like isoform X1 [KO:K01958] [EC:6.4.1.1]
108615176  pyruvate carboxylase, mitochondrial-like [KO:K01958] [EC:6.4.1.1]
108616797  phosphoenolpyruvate carboxykinase [GTP] [KO:K01596] [EC:4.1.1.32]
108616798  phosphoenolpyruvate carboxykinase [GTP]-like [KO:K01596] [EC:4.1.1.32]
108619572  pyruvate dehydrogenase E1 component subunit alpha, mitochondrial [KO:K00161] [EC:1.2.4.1]
108619575  pyruvate dehydrogenase E1 component subunit alpha, mitochondrial [KO:K00161] [EC:1.2.4.1]
108611388  pyruvate dehydrogenase E1 component subunit alpha, mitochondrial-like [KO:K00161] [EC:1.2.4.1]
108621805  pyruvate dehydrogenase E1 component subunit beta, mitochondrial isoform X1 [KO:K00162] [EC:1.2.4.1]
108610361  dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial isoform X1 [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
daz00010  Glycolysis / Gluconeogenesis
daz00053  Ascorbate and aldarate metabolism
daz00061  Fatty acid biosynthesis
daz00062  Fatty acid elongation
daz00071  Fatty acid degradation
daz00190  Oxidative phosphorylation
daz00220  Arginine biosynthesis
daz00250  Alanine, aspartate and glutamate metabolism
daz00280  Valine, leucine and isoleucine degradation
daz00350  Tyrosine metabolism
daz00470  D-Amino acid metabolism
daz00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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