KEGG   PATHWAY: dei00020
Entry
dei00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Devosia sp. I507
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
dei00020  Citrate cycle (TCA cycle)
dei00020

Module
dei_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:dei00020]
dei_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:dei00020]
dei_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:dei00020]
dei_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:dei00020]
dei_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:dei00020]
Other DBs
GO: 0006099
Organism
Devosia sp. I507 [GN:dei]
Gene
C4375_18055  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
C4375_02990  citrate synthase/methylcitrate synthase [KO:K01647] [EC:2.3.3.1]
C4375_02995  citrate synthase [KO:K01647] [EC:2.3.3.1]
C4375_08130  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
C4375_15485  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
C4375_12770  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
C4375_12775  dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
C4375_17730  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
C4375_12795  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
C4375_12765  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
C4375_12755  ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
C4375_08285  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
C4375_08300  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
C4375_08275  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
C4375_08280  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
C4375_09045  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
C4375_12750  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
C4375_08985  pyc; pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
C4375_05915  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
C4375_17700  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
C4375_17710  pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
C4375_17715  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
dei00010  Glycolysis / Gluconeogenesis
dei00053  Ascorbate and aldarate metabolism
dei00061  Fatty acid biosynthesis
dei00071  Fatty acid degradation
dei00190  Oxidative phosphorylation
dei00220  Arginine biosynthesis
dei00250  Alanine, aspartate and glutamate metabolism
dei00280  Valine, leucine and isoleucine degradation
dei00350  Tyrosine metabolism
dei00470  D-Amino acid metabolism
dei00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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