KEGG   PATHWAY: des00020
Entry
des00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Desulfuromonas soudanensis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
des00020  Citrate cycle (TCA cycle)
des00020

Module
des_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:des00020]
des_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:des00020]
des_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:des00020]
des_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:des00020]
des_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:des00020]
Other DBs
GO: 0006099
Organism
Desulfuromonas soudanensis [GN:des]
Gene
DSOUD_1023  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
DSOUD_2757  acnA; aconitate hydratase [KO:K27802] [EC:4.2.1.3 4.2.1.99]
DSOUD_1494  acnB; aconitase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
DSOUD_1473  icd; isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
DSOUD_3142  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
DSOUD_3141  sucB; 2-oxoglutarate dehydrogenase E2 component [KO:K00658] [EC:2.3.1.61]
DSOUD_2790  lpdA-1; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
DSOUD_1747  vorA; pyruvate:ferredoxin oxidoreductase, alpha subunit [KO:K00174] [EC:1.2.7.3 1.2.7.11]
DSOUD_1470  korA; 2-oxoglutarate:ferredoxin oxidoreductase, alpha subunit [KO:K00174] [EC:1.2.7.3 1.2.7.11]
DSOUD_1748  vorB; pyruvate:ferredoxin oxidoreductase, beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
DSOUD_1469  korB; 2-oxoglutarate:ferredoxin oxidoreductase, beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
DSOUD_1749  vorC; pyruvate:ferredoxin oxidoreductase, gamma subunit [KO:K00177] [EC:1.2.7.3]
DSOUD_1468  korC; 2-oxoglutarate:ferredoxin oxidoreductase, gamma subunit [KO:K00177] [EC:1.2.7.3]
DSOUD_1746  vorD; putative ferredoxin [KO:K00176] [EC:1.2.7.3]
DSOUD_1471  korD; tungsten formylmethanofuran dehydrogenase [KO:K00176] [EC:1.2.7.3]
DSOUD_3446  sucD; succinyl-CoA synthetase, alpha subunit [KO:K01902] [EC:6.2.1.5]
DSOUD_3447  sucC; succinyl-CoA synthetase, beta subunit [KO:K01903] [EC:6.2.1.5]
DSOUD_1643  frdA; succinate dehydrogenase subunit A [KO:K00239] [EC:1.3.5.1]
DSOUD_1644  frdB; succinate dehydrogenase subunit B [KO:K00240] [EC:1.3.5.1]
DSOUD_1642  frdC; succinate dehydrogenase subunit C [KO:K00241]
DSOUD_2216  fumB; fumarate hydratase [KO:K01676] [EC:4.2.1.2]
DSOUD_0283  aspA; fumarase, class II [KO:K01679] [EC:4.2.1.2]
DSOUD_1472  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
DSOUD_1251  pyc; pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
DSOUD_0091  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
DSOUD_1371  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
DSOUD_2781  pdhA; pyruvate dehydrogenase E1 component, alpha subunit [KO:K00161] [EC:1.2.4.1]
DSOUD_2892  bkdA; pyruvate dehydrogenase E1 component, alpha subunit [KO:K00161] [EC:1.2.4.1]
DSOUD_2893  bkdB; pyruvate/2-oxoglutarate/acetoin dehydrogenase complex, dehydrogenase (E1) component [KO:K00162] [EC:1.2.4.1]
DSOUD_2780  pdhB; pyruvate/2-oxoglutarate/acetoin dehydrogenase complex, dehydrogenase (E1) component [KO:K00162] [EC:1.2.4.1]
DSOUD_2779  pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component [KO:K00627] [EC:2.3.1.12]
DSOUD_2894  bkdF; pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component [KO:K00627] [EC:2.3.1.12]
DSOUD_0375  por-2; pyruvate-flavodoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
DSOUD_0297  por-1; pyruvate-flavodoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
des00010  Glycolysis / Gluconeogenesis
des00053  Ascorbate and aldarate metabolism
des00061  Fatty acid biosynthesis
des00071  Fatty acid degradation
des00190  Oxidative phosphorylation
des00220  Arginine biosynthesis
des00250  Alanine, aspartate and glutamate metabolism
des00280  Valine, leucine and isoleucine degradation
des00350  Tyrosine metabolism
des00470  D-Amino acid metabolism
des00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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