KEGG   PATHWAY: dhk00630
Entry
dhk00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Delftia sp. HK171
Class
Metabolism; Carbohydrate metabolism
Pathway map
dhk00630  Glyoxylate and dicarboxylate metabolism
dhk00630

Module
dhk_M00012  Glyoxylate cycle [PATH:dhk00630]
dhk_M00621  Glycine cleavage system [PATH:dhk00630]
Other DBs
GO: 0046487 0043648
Organism
Delftia sp. HK171 [GN:dhk]
Gene
BO996_20960  isocitrate lyase [KO:K01637] [EC:4.1.3.1 4.1.3.30]
BO996_08310  acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
BO996_12685  acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
BO996_03385  malate synthase G [KO:K01638] [EC:2.3.3.9]
BO996_11345  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
BO996_04050  citryl-CoA lyase [KO:K01647] [EC:2.3.3.1]
BO996_11310  citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
BO996_22485  excisionase [KO:K01647] [EC:2.3.3.1]
BO996_27515  2-methylcitrate synthase [KO:K01659] [EC:2.3.3.5]
BO996_20635  aconitate hydratase [KO:K27802] [EC:4.2.1.3 4.2.1.99]
BO996_11365  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
BO996_28120  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
BO996_02870  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
BO996_07100  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
BO996_21985  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
BO996_15210  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
BO996_02025  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
BO996_16290  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
BO996_20880  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
BO996_16295  beta-ketoacyl-ACP reductase [KO:K00023] [EC:1.1.1.36]
BO996_17070  acetyl/propionyl-CoA carboxylase subuit alpha [KO:K01965] [EC:6.4.1.3]
BO996_17065  methylmalonyl-CoA carboxyltransferase [KO:K01966] [EC:6.4.1.3 2.1.3.15]
BO996_26790  acetyl/propionyl-CoA carboxylase subuit alpha [KO:K11263] [EC:6.4.1.2 6.4.1.3 6.4.1.- 6.3.4.14]
BO996_17055  methylmalonyl-CoA mutase [KO:K01847] [EC:5.4.99.2]
BO996_05495  FAD-binding oxidoreductase [KO:K00104] [EC:1.1.99.14]
BO996_01455  glycolate oxidase subunit GlcE [KO:K11472] [EC:1.1.99.14]
BO996_01445  glycolate oxidase iron-sulfur subunit [KO:K11473] [EC:1.1.99.14]
BO996_19475  catalase HPII [KO:K03781] [EC:1.11.1.6]
BO996_19040  catalase [KO:K03781] [EC:1.11.1.6]
BO996_28025  glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
BO996_26350  glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
BO996_07165  glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
BO996_21530  D-glycerate dehydrogenase [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
BO996_03755  phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
BO996_24400  HAD family hydrolase [KO:K01091] [EC:3.1.3.18]
BO996_14135  serine--glyoxylate aminotransferase [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
BO996_23010  type I glutamate--ammonia ligase [KO:K01915] [EC:6.3.1.2]
BO996_16890  serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
BO996_16865  glyA; serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
BO996_22740  glyA; serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
BO996_19405  glycine dehydrogenase (aminomethyl-transferring) [KO:K00281] [EC:1.4.4.2]
BO996_19395  gcvT; glycine cleavage system protein T [KO:K00605] [EC:2.1.2.10]
BO996_15795  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
BO996_18175  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
BO996_18385  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
BO996_19400  glycine cleavage system protein H [KO:K02437]
BO996_09850  glyoxylate carboligase [KO:K01608] [EC:4.1.1.47]
BO996_09855  hydroxypyruvate isomerase [KO:K01816] [EC:5.3.1.22]
BO996_09860  2-hydroxy-3-oxopropionate reductase [KO:K00042] [EC:1.1.1.60]
BO996_09830  glycerate kinase [KO:K11529] [EC:2.7.1.165]
BO996_01520  aldehyde dehydrogenase [KO:K07248] [EC:1.2.1.22 1.2.1.21]
BO996_09820  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
BO996_11020  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
BO996_17110  keto-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
BO996_08815  formate dehydrogenase [KO:K00126] [EC:1.17.1.9]
BO996_15770  formate dehydrogenase-N subunit alpha [KO:K00123] [EC:1.17.1.9]
BO996_15775  sulfate ABC transporter substrate-binding protein [KO:K00123] [EC:1.17.1.9]
BO996_08810  formate dehydrogenase subunit alpha [KO:K00123] [EC:1.17.1.9]
BO996_15765  formate dehydrogenase subunit beta [KO:K00124]
BO996_08805  formate dehydrogenase subunit gamma [KO:K00124]
BO996_15760  formate dehydrogenase subunit gamma [KO:K00127]
BO996_20305  esterase [KO:K01432] [EC:3.5.1.9]
BO996_10075  arylformamidase [KO:K07130] [EC:3.5.1.9]
BO996_05485  formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
BO996_01860  formamidase [KO:K01455] [EC:3.5.1.49]
BO996_02100  formamidase [KO:K01455] [EC:3.5.1.49]
BO996_02215  N-formylglutamate deformylase [KO:K01458] [EC:3.5.1.68]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
dhk00010  Glycolysis / Gluconeogenesis
dhk00020  Citrate cycle (TCA cycle)
dhk00030  Pentose phosphate pathway
dhk00053  Ascorbate and aldarate metabolism
dhk00071  Fatty acid degradation
dhk00230  Purine metabolism
dhk00250  Alanine, aspartate and glutamate metabolism
dhk00260  Glycine, serine and threonine metabolism
dhk00620  Pyruvate metabolism
dhk00710  Carbon fixation by Calvin cycle
dhk00750  Vitamin B6 metabolism
dhk00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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