KEGG   PATHWAY: dit00020
Entry
dit00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Dietzia sp. oral taxon 368
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
dit00020  Citrate cycle (TCA cycle)
dit00020

Module
dit_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:dit00020]
dit_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:dit00020]
dit_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:dit00020]
dit_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:dit00020]
dit_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:dit00020]
Other DBs
GO: 0006099
Organism
Dietzia sp. oral taxon 368 [GN:dit]
Gene
C3V38_10095  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
C3V38_13905  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
C3V38_02495  acnA; aconitate hydratase [KO:K01681] [EC:4.2.1.3]
C3V38_00185  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
C3V38_10390  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
C3V38_15665  kgd; multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
C3V38_03330  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
C3V38_08680  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
C3V38_08675  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
C3V38_01250  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
C3V38_01255  ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
C3V38_01740  succinate CoA transferase [KO:K18118] [EC:2.8.3.18]
C3V38_10465  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
C3V38_10460  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
C3V38_10475  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
C3V38_10470  succinate dehydrogenase [KO:K00242]
C3V38_00040  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
C3V38_00310  aspA; aspartate ammonia-lyase [KO:K01679] [EC:4.2.1.2]
C3V38_11370  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
C3V38_14910  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
C3V38_04220  phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
C3V38_11765  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
C3V38_11915  sucB; 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
dit00010  Glycolysis / Gluconeogenesis
dit00061  Fatty acid biosynthesis
dit00062  Fatty acid elongation
dit00071  Fatty acid degradation
dit00190  Oxidative phosphorylation
dit00220  Arginine biosynthesis
dit00250  Alanine, aspartate and glutamate metabolism
dit00280  Valine, leucine and isoleucine degradation
dit00350  Tyrosine metabolism
dit00470  D-Amino acid metabolism
dit00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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