KEGG   PATHWAY: dlu00630
Entry
dlu00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Dietzia lutea
Class
Metabolism; Carbohydrate metabolism
Pathway map
dlu00630  Glyoxylate and dicarboxylate metabolism
dlu00630

Module
dlu_M00012  Glyoxylate cycle [PATH:dlu00630]
dlu_M00621  Glycine cleavage system [PATH:dlu00630]
dlu_M00741  Propanoyl-CoA metabolism, propanoyl-CoA => succinyl-CoA [PATH:dlu00630]
Other DBs
GO: 0046487 0043648
Organism
Dietzia lutea [GN:dlu]
Gene
A6035_13515  isocitrate lyase [KO:K01637] [EC:4.1.3.1 4.1.3.30]
A6035_03790  AMP-dependent synthetase [KO:K01895] [EC:6.2.1.1]
A6035_13175  hypothetical protein [KO:K01895] [EC:6.2.1.1]
A6035_02720  acetyl-coenzyme A synthetase [KO:K01895] [EC:6.2.1.1]
A6035_11650  AMP-dependent synthetase [KO:K01895] [EC:6.2.1.1]
A6035_08575  malate synthase G [KO:K01638] [EC:2.3.3.9]
A6035_05630  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
A6035_04290  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
A6035_07950  acnA; aconitate hydratase [KO:K27802] [EC:4.2.1.3 4.2.1.99]
A6035_12570  acnA; aconitate hydratase [KO:K27802] [EC:4.2.1.3 4.2.1.99]
A6035_16735  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
A6035_03505  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
A6035_03565  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
A6035_03590  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
A6035_04100  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
A6035_09330  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
A6035_05605  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
A6035_10035  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
A6035_14535  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
A6035_10240  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
A6035_09335  methylmalonyl-CoA epimerase [KO:K05606] [EC:5.1.99.1]
A6035_04775  acetyl-/propionyl-CoA carboxylase subunit alpha [KO:K11263] [EC:6.4.1.2 6.4.1.3 6.4.1.- 6.3.4.14]
A6035_04795  methylmalonyl-CoA carboxyltransferase [KO:K27094] [EC:6.4.1.3 6.4.1.- 2.1.3.15]
A6035_04790  hypothetical protein [KO:K27095]
A6035_06025  propionyl-CoA carboxylase subunit beta [KO:K18472] [EC:6.4.1.2 6.4.1.3 2.1.3.15]
A6035_07885  methylmalonyl-CoA mutase [KO:K01847] [EC:5.4.99.2]
A6035_04530  FAD-linked oxidase [KO:K00104] [EC:1.1.99.14]
A6035_02575  catalase [KO:K03781] [EC:1.11.1.6]
A6035_00390  catalase HPII [KO:K03781] [EC:1.11.1.6]
A6035_14525  catalase [KO:K03781] [EC:1.11.1.6]
A6035_06080  HAD family hydrolase [KO:K01091] [EC:3.1.3.18]
A6035_10760  haloacid dehalogenase [KO:K01091] [EC:3.1.3.18]
A6035_00305  type III glutamate--ammonia ligase [KO:K01915] [EC:6.3.1.2]
A6035_00640  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
A6035_06135  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
A6035_06170  type I glutamate--ammonia ligase [KO:K01915] [EC:6.3.1.2]
A6035_02455  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
A6035_10130  serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
A6035_07290  glycine dehydrogenase (aminomethyl-transferring) [KO:K00281] [EC:1.4.4.2]
A6035_06210  glycine cleavage system protein T [KO:K00605] [EC:2.1.2.10]
A6035_13550  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
A6035_07265  glycine cleavage system protein H [KO:K02437]
A6035_01465  glycerate kinase [KO:K00865] [EC:2.7.1.165]
A6035_09530  kgd; alpha-ketoglutarate decarboxylase [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
A6035_16625  dehydrogenase [KO:K00123] [EC:1.17.1.9]
A6035_16630  formate dehydrogenase [KO:K00123] [EC:1.17.1.9]
A6035_16635  4Fe-4S ferredoxin [KO:K00124]
A6035_13470  formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
A6035_16300  formamidase [KO:K01455] [EC:3.5.1.49]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
dlu00010  Glycolysis / Gluconeogenesis
dlu00020  Citrate cycle (TCA cycle)
dlu00030  Pentose phosphate pathway
dlu00071  Fatty acid degradation
dlu00230  Purine metabolism
dlu00250  Alanine, aspartate and glutamate metabolism
dlu00260  Glycine, serine and threonine metabolism
dlu00620  Pyruvate metabolism
dlu00710  Carbon fixation by Calvin cycle
dlu00750  Vitamin B6 metabolism
dlu00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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