KEGG   PATHWAY: dmb00010
Entry
dmb00010                    Pathway                                
Name
Glycolysis / Gluconeogenesis - Deinococcus metallilatus
Description
Glycolysis is the process of converting glucose into pyruvate and generating small amounts of ATP (energy) and NADH (reducing power). It is a central pathway that produces important precursor metabolites: six-carbon compounds of glucose-6P and fructose-6P and three-carbon compounds of glycerone-P, glyceraldehyde-3P, glycerate-3P, phosphoenolpyruvate, and pyruvate [MD:M00001]. Acetyl-CoA, another important precursor metabolite, is produced by oxidative decarboxylation of pyruvate [MD:M00307]. When the enzyme genes of this pathway are examined in completely sequenced genomes, the reaction steps of three-carbon compounds from glycerone-P to pyruvate form a conserved core module [MD:M00002], which is found in almost all organisms and which sometimes contains operon structures in bacterial genomes. Gluconeogenesis is a synthesis pathway of glucose from noncarbohydrate precursors. It is essentially a reversal of glycolysis with minor variations of alternative paths [MD:M00003].
Class
Metabolism; Carbohydrate metabolism
Pathway map
dmb00010  Glycolysis / Gluconeogenesis
dmb00010

Module
dmb_M00001  Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate [PATH:dmb00010]
dmb_M00002  Glycolysis, core module involving three-carbon compounds [PATH:dmb00010]
dmb_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:dmb00010]
dmb_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:dmb00010]
Other DBs
GO: 0006096 0006094
Organism
Deinococcus metallilatus [GN:dmb]
Gene
E5F05_18905  ROK family protein [KO:K25026] [EC:2.7.1.2]
E5F05_11400  glucose-6-phosphate isomerase [KO:K01810] [EC:5.3.1.9]
E5F05_09925  pfkA; 6-phosphofructokinase [KO:K00850] [EC:2.7.1.11]
E5F05_17900  glpX; class II fructose-bisphosphatase [KO:K02446] [EC:3.1.3.11]
E5F05_18730  fba; class II fructose-1,6-bisphosphate aldolase [KO:K01624] [EC:4.1.2.13]
E5F05_01175  class II fructose-bisphosphate aldolase [KO:K01624] [EC:4.1.2.13]
E5F05_03000  class II fructose-bisphosphate aldolase [KO:K01624] [EC:4.1.2.13]
E5F05_13730  triose-phosphate isomerase [KO:K01803] [EC:5.3.1.1]
E5F05_13720  gap; type I glyceraldehyde-3-phosphate dehydrogenase [KO:K00134] [EC:1.2.1.12]
E5F05_04880  type II glyceraldehyde-3-phosphate dehydrogenase [KO:K00150] [EC:1.2.1.59]
E5F05_13725  pgk; phosphoglycerate kinase [KO:K00927] [EC:2.7.2.3]
E5F05_06805  histidine phosphatase family protein [KO:K01834] [EC:5.4.2.11]
E5F05_10765  histidine phosphatase family protein [KO:K01834] [EC:5.4.2.11]
E5F05_13940  histidine phosphatase family protein [KO:K01834] [EC:5.4.2.11]
E5F05_13690  histidine phosphatase family protein [KO:K15634] [EC:5.4.2.11]
E5F05_06955  2,3-bisphosphoglycerate-independent phosphoglycerate mutase [KO:K15635] [EC:5.4.2.12]
E5F05_05875  phosphopyruvate hydratase [KO:K01689] [EC:4.2.1.11]
E5F05_05880  pyk; pyruvate kinase [KO:K00873] [EC:2.7.1.40]
E5F05_15900  ppsA; phosphoenolpyruvate synthase [KO:K01007] [EC:2.7.9.2]
E5F05_17985  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
E5F05_10165  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
E5F05_10160  alpha-ketoacid dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
E5F05_17980  aceF; dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
E5F05_06765  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
E5F05_07665  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
E5F05_10850  aldehyde dehydrogenase family protein [KO:K00128] [EC:1.2.1.3]
E5F05_08730  acs; acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
E5F05_09110  acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
E5F05_00235  AMP-dependent synthetase [KO:K01895] [EC:6.2.1.1]
E5F05_18320  aldose 1-epimerase [KO:K01785] [EC:5.1.3.3]
E5F05_00400  galactose mutarotase [KO:K01785] [EC:5.1.3.3]
E5F05_17895  alpha-D-glucose phosphate-specific phosphoglucomutase [KO:K01835] [EC:5.4.2.2]
E5F05_10435  ROK family protein [KO:K00886] [EC:2.7.1.63]
E5F05_14130  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00031  D-Glucose
C00033  Acetate
C00036  Oxaloacetate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00084  Acetaldehyde
C00085  D-Fructose 6-phosphate
C00103  D-Glucose 1-phosphate
C00111  Glycerone phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00186  (S)-Lactate
C00197  3-Phospho-D-glycerate
C00221  beta-D-Glucose
C00236  3-Phospho-D-glyceroyl phosphate
C00267  alpha-D-Glucose
C00354  D-Fructose 1,6-bisphosphate
C00469  Ethanol
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C01159  2,3-Bisphospho-D-glycerate
C01172  beta-D-Glucose 6-phosphate
C01451  Salicin
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C06186  Arbutin
C06187  Arbutin 6-phosphate
C06188  Salicin 6-phosphate
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
dmb00020  Citrate cycle (TCA cycle)
dmb00030  Pentose phosphate pathway
dmb00500  Starch and sucrose metabolism
dmb00620  Pyruvate metabolism
dmb00640  Propanoate metabolism
dmb00710  Carbon fixation by Calvin cycle
KO pathway
ko00010   
LinkDB

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