KEGG   PATHWAY: dmd00020
Entry
dmd00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Dehalococcoides mccartyi DCMB5
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
dmd00020  Citrate cycle (TCA cycle)
dmd00020

Module
dmd_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:dmd00020]
Other DBs
GO: 0006099
Organism
Dehalococcoides mccartyi DCMB5 [GN:dmd]
Gene
dcmb_1500  re-citrate synthase [KO:K05942] [EC:2.3.3.3]
dcmb_461  icd; isocitrate dehydrogenase [KO:K00030] [EC:1.1.1.41]
dcmb_464  fumarate hydratase class I, large subunit [KO:K01677] [EC:4.2.1.2]
dcmb_465  fumarate hydratase class I, small subunit [KO:K01678] [EC:4.2.1.2]
dcmb_462  mdh; L-lactate dehydrogenase-like malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
dcmb_144  pycA; pyruvate carboxyl transferase subunit A [KO:K01959] [EC:6.4.1.1]
dcmb_143  pycB; pyruvate carboxyl transferase subunit B [KO:K01960] [EC:6.4.1.1]
dcmb_693  porA; pyruvate ferredoxin oxidoreductase, subunit alpha [KO:K00169] [EC:1.2.7.1]
dcmb_694  porB; pyruvate ferredoxin oxidoreductase, subunit beta [KO:K00170] [EC:1.2.7.1]
dcmb_691  porC; pyruvate ferredoxin oxidoreductase, subunit gamma [KO:K00172] [EC:1.2.7.1]
dcmb_692  porD; pyruvate ferredoxin oxidoreductase, subunit delta [KO:K00171] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
dmd00010  Glycolysis / Gluconeogenesis
dmd00061  Fatty acid biosynthesis
dmd00190  Oxidative phosphorylation
dmd00220  Arginine biosynthesis
dmd00250  Alanine, aspartate and glutamate metabolism
dmd00280  Valine, leucine and isoleucine degradation
dmd00470  D-Amino acid metabolism
dmd00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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