KEGG   PATHWAY: dmi03430
Entry
dmi03430                    Pathway                                
Name
Mismatch repair - Desulfosporosinus meridiei
Description
DNA mismatch repair (MMR) is a highly conserved biological pathway that plays a key role in maintaining genomic stability. MMR corrects DNA mismatches generated during DNA replication, thereby preventing mutations from becoming permanent in dividing cells. MMR also suppresses homologous recombination and was recently shown to play a role in DNA damage signaling. Defects in MMR are associated with genome-wide instability, predisposition to certain types of cancer including HNPCC, resistance to certain chemotherapeutic agents, and abnormalities in meiosis and sterility in mammalian systems.
The Escherichia coli MMR pathway has been extensively studied and is well characterized. In E. coli, the mismatch-activated MutS-MutL-ATP complex licenses MutH to incise the nearest unmethylated GATC sequence. UvrD and an exonuclease generate a gap. This gap is filled by pol III and DNA ligase. The GATC sites are then methylated by Dam. Several human MMR proteins have been identified based on their homology to E. coli MMR proteins. These include human homologs of MutS and MutL. Although E. coli MutS and MutL proteins are homodimers, human MutS and MutL homologs are heterodimers. The role of hemimethylated dGATC sites as a signal for strand discrimination is not conserved from E. coli to human. Human MMR is presumed to be nick-directed in vivo, and is thought to discriminate daughter and template strands using a strand-specific nick.
Class
Genetic Information Processing; Replication and repair
Pathway map
dmi03430  Mismatch repair
dmi03430

Other DBs
GO: 0006298
Organism
Desulfosporosinus meridiei [GN:dmi]
Gene
Desmer_2473  DNA mismatch repair protein MutS [KO:K03555]
Desmer_0149  MutS2 family protein [KO:K07456]
Desmer_3221  MutS domain V [KO:K07456]
Desmer_2470  DNA mismatch repair protein MutL [KO:K03572]
Desmer_1324  DNA/RNA helicase, superfamily I [KO:K03657] [EC:5.6.2.4]
Desmer_3532  DNA/RNA helicase, superfamily I [KO:K03657] [EC:5.6.2.4]
Desmer_3047  ATP-dependent DNA helicase PcrA [KO:K03657] [EC:5.6.2.4]
Desmer_1032  Exodeoxyribonuclease VII large subunit [KO:K03601] [EC:3.1.11.6]
Desmer_1033  Exodeoxyribonuclease VII small subunit [KO:K03602] [EC:3.1.11.6]
Desmer_0944  single-stranded-DNA-specific exonuclease RecJ [KO:K07462] [EC:3.1.-.-]
Desmer_4637  single-stranded DNA-binding protein [KO:K03111]
Desmer_2860  DNA-directed DNA polymerase III PolC [KO:K02337] [EC:2.7.7.7]
Desmer_3523  DNA polymerase III, alpha chain [KO:K03763] [EC:2.7.7.7]
Desmer_0003  DNA polymerase III, beta subunit [KO:K02338] [EC:2.7.7.7]
Desmer_0020  DNA polymerase III, subunit gamma/tau [KO:K02343] [EC:2.7.7.7]
Desmer_4028  DNA polymerase III, delta subunit [KO:K02340] [EC:2.7.7.7]
Desmer_0031  DNA polymerase III, delta prime subunit [KO:K02341] [EC:2.7.7.7]
Desmer_3045  DNA ligase, NAD-dependent [KO:K01972] [EC:6.5.1.2]
Desmer_4441  DNA adenine methylase Dam [KO:K06223] [EC:2.1.1.72]
Reference
  Authors
Jiricny J.
  Title
The multifaceted mismatch-repair system.
  Journal
Nat Rev Mol Cell Biol 7:335-46 (2006)
DOI:10.1038/nrm1907
Reference
  Authors
Li GM.
  Title
Mechanisms and functions of DNA mismatch repair.
  Journal
Cell Res 18:85-98 (2008)
DOI:10.1038/cr.2007.115
Reference
  Authors
Marti TM, Kunz C, Fleck O.
  Title
DNA mismatch repair and mutation avoidance pathways.
  Journal
J Cell Physiol 191:28-41 (2002)
DOI:10.1002/jcp.10077
Reference
  Authors
Ikejima M, Shimada T.
  Title
[Molecular mechanism of mismatch repair]
  Journal
Tanpakushitsu Kakusan Koso 46:1124-9 (2001)
KO pathway
ko03430   
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