KEGG   PATHWAY: dmn00020
Entry
dmn00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Drosophila miranda
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
dmn00020  Citrate cycle (TCA cycle)
dmn00020

Module
dmn_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:dmn00020]
dmn_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:dmn00020]
dmn_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:dmn00020]
dmn_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:dmn00020]
dmn_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:dmn00020]
Other DBs
GO: 0006099
Organism
Drosophila miranda [GN:dmn]
Gene
108156249  probable citrate synthase, mitochondrial isoform X1 [KO:K01647] [EC:2.3.3.1]
108157758  probable citrate synthase, mitochondrial [KO:K01647] [EC:2.3.3.1]
108159977  ATP-citrate synthase isoform X1 [KO:K01648] [EC:2.3.3.8]
117192680  ATP-citrate synthase-like isoform X1 [KO:K01648] [EC:2.3.3.8]
108156446  cytoplasmic aconitate hydratase [KO:K01681] [EC:4.2.1.3]
108157552  probable aconitate hydratase, mitochondrial [KO:K01681] [EC:4.2.1.3]
108162750  probable aconitate hydratase, mitochondrial [KO:K01681] [EC:4.2.1.3]
108156969  cytoplasmic aconitate hydratase isoform X1 [KO:K01681] [EC:4.2.1.3]
108152005  isocitrate dehydrogenase [NADP] cytoplasmic isoform X1 [KO:K00031] [EC:1.1.1.42]
108152518  nascent polypeptide-associated complex subunit alpha, muscle-specific form [KO:K00030] [EC:1.1.1.41]
108156347  isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial isoform X1 [KO:K00030] [EC:1.1.1.41]
108164700  probable isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial isoform X1 [KO:K00030] [EC:1.1.1.41]
108161013  isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial [KO:K00030] [EC:1.1.1.41]
108156091  isocitrate dehydrogenase [NAD] subunit beta, mitochondrial [KO:K00030] [EC:1.1.1.41]
108159149  isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial [KO:K00030] [EC:1.1.1.41]
117185705  isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial-like isoform X1 [KO:K00030] [EC:1.1.1.41]
108151762  2-oxoglutarate dehydrogenase, mitochondrial [KO:K00164] [EC:1.2.4.2]
108152239  2-oxoglutarate dehydrogenase-like, mitochondrial isoform X1 [KO:K00164] [EC:1.2.4.2]
108154964  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial [KO:K00658] [EC:2.3.1.61]
108151259  dihydrolipoyl dehydrogenase, mitochondrial [KO:K00382] [EC:1.8.1.4]
108153761  succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial [KO:K01899] [EC:6.2.1.4 6.2.1.5]
108153236  succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial [KO:K01899] [EC:6.2.1.4 6.2.1.5]
108150911  succinate--CoA ligase [GDP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
108154600  succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial isoform X1 [KO:K01900] [EC:6.2.1.4 6.2.1.5]
108152766  succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial [KO:K00234] [EC:1.3.5.1]
108158599  succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial isoform X1 [KO:K00234] [EC:1.3.5.1]
117188037  succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial isoform X1 [KO:K00234] [EC:1.3.5.1]
108165130  succinate dehydrogenase [ubiquinone] iron-sulfur subunit [KO:K00235] [EC:1.3.5.1]
108160429  succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial [KO:K00235] [EC:1.3.5.1]
117188095  succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial-like [KO:K00235] [EC:1.3.5.1]
108154347  uncharacterized protein LOC108154347 [KO:K00236]
108156776  succinate dehydrogenase cytochrome b560 subunit, mitochondrial [KO:K00236]
108154678  succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial [KO:K00237]
108154778  probable fumarate hydratase, mitochondrial [KO:K01679] [EC:4.2.1.2]
108154788  fumarate hydratase, mitochondrial isoform X1 [KO:K01679] [EC:4.2.1.2]
108153744  probable fumarate hydratase, mitochondrial [KO:K01679] [EC:4.2.1.2]
108162038  probable fumarate hydratase, mitochondrial [KO:K01679] [EC:4.2.1.2]
117188620  malate dehydrogenase, cytoplasmic isoform X1 [KO:K00025] [EC:1.1.1.37]
108165581  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
108150762  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
108156672  malate dehydrogenase, mitochondrial-like [KO:K00026] [EC:1.1.1.37]
108156680  malate dehydrogenase-like [KO:K00026] [EC:1.1.1.37]
108153851  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
117191886  malate dehydrogenase, mitochondrial-like [KO:K00026] [EC:1.1.1.37]
108160888  malate dehydrogenase, mitochondrial-like [KO:K00026] [EC:1.1.1.37]
108158795  pyruvate carboxylase, mitochondrial isoform X1 [KO:K01958] [EC:6.4.1.1]
108160457  phosphoenolpyruvate carboxykinase [GTP] [KO:K01596] [EC:4.1.1.32]
108160113  phosphoenolpyruvate carboxykinase [GTP] [KO:K01596] [EC:4.1.1.32]
108163681  pyruvate dehydrogenase E1 component subunit alpha, mitochondrial-like [KO:K00161] [EC:1.2.4.1]
108160453  probable pyruvate dehydrogenase E1 component subunit alpha, mitochondrial [KO:K00161] [EC:1.2.4.1]
108160461  pyruvate dehydrogenase E1 component subunit alpha, mitochondrial [KO:K00161] [EC:1.2.4.1]
108155650  pyruvate dehydrogenase E1 component subunit beta, mitochondrial isoform X1 [KO:K00162] [EC:1.2.4.1]
108163185  dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial isoform X1 [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
dmn00010  Glycolysis / Gluconeogenesis
dmn00053  Ascorbate and aldarate metabolism
dmn00061  Fatty acid biosynthesis
dmn00062  Fatty acid elongation
dmn00071  Fatty acid degradation
dmn00190  Oxidative phosphorylation
dmn00220  Arginine biosynthesis
dmn00250  Alanine, aspartate and glutamate metabolism
dmn00280  Valine, leucine and isoleucine degradation
dmn00350  Tyrosine metabolism
dmn00470  D-Amino acid metabolism
dmn00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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