KEGG   PATHWAY: dmp00020
Entry
dmp00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Desulfoferula mesophila
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
dmp00020  Citrate cycle (TCA cycle)
dmp00020

Module
dmp_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:dmp00020]
dmp_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:dmp00020]
dmp_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:dmp00020]
dmp_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:dmp00020]
dmp_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:dmp00020]
Other DBs
GO: 0006099
Organism
Desulfoferula mesophila [GN:dmp]
Gene
FAK_10550  histone-lysine N-methyltransferase [KO:K05942] [EC:2.3.3.3]
FAK_23260  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
FAK_11120  isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
FAK_08370  acoL; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
FAK_17430  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
FAK_25900  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
FAK_06830  2-oxoglutarate ferredoxin oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
FAK_16040  2-oxoglutarate ferredoxin oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
FAK_17250  2-oxoglutarate ferredoxin oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
FAK_21980  2-oxoglutarate ferredoxin oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
FAK_23030  vorA; 3-methyl-2-oxobutanoate dehydrogenase subunit VorB [KO:K00174] [EC:1.2.7.3 1.2.7.11]
FAK_25190  3-methyl-2-oxobutanoate dehydrogenase subunit VorB [KO:K00174] [EC:1.2.7.3 1.2.7.11]
FAK_35510  porA; pyruvate ferredoxin oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
FAK_40510  korA; 2-oxoglutarate ferredoxin oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
FAK_06840  2-oxoglutarate ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
FAK_16050  2-oxoglutarate ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
FAK_17260  2-oxoglutarate synthase [KO:K00175] [EC:1.2.7.3 1.2.7.11]
FAK_21970  2-oxoglutarate synthase [KO:K00175] [EC:1.2.7.3 1.2.7.11]
FAK_23040  vorB; MFS transporter [KO:K00175] [EC:1.2.7.3 1.2.7.11]
FAK_25200  2-oxoglutarate oxidoreductase [KO:K00175] [EC:1.2.7.3 1.2.7.11]
FAK_35500  porB; pyruvate ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
FAK_40500  2-oxoglutarate synthase [KO:K00175] [EC:1.2.7.3 1.2.7.11]
FAK_06850  2-oxoglutarate ferredoxin oxidoreductase subunit gamma [KO:K00177] [EC:1.2.7.3]
FAK_16060  korC; 2-oxoglutarate ferredoxin oxidoreductase subunit gamma [KO:K00177] [EC:1.2.7.3]
FAK_17270  2-oxoglutarate ferredoxin oxidoreductase subunit gamma [KO:K00177] [EC:1.2.7.3]
FAK_21950  2-oxoglutarate ferredoxin oxidoreductase subunit gamma [KO:K00177] [EC:1.2.7.3]
FAK_23050  2-oxoacid:ferredoxin oxidoreductase subunit gamma [KO:K00177] [EC:1.2.7.3]
FAK_25210  2-oxoacid:ferredoxin oxidoreductase subunit gamma [KO:K00177] [EC:1.2.7.3]
FAK_40490  korC; 2-oxoglutarate ferredoxin oxidoreductase subunit gamma [KO:K00177] [EC:1.2.7.3]
FAK_04850  hypothetical protein [KO:K00176] [EC:1.2.7.3]
FAK_16030  hypothetical protein [KO:K00176] [EC:1.2.7.3]
FAK_21960  tungsten formylmethanofuran dehydrogenase subunit G [KO:K00176] [EC:1.2.7.3]
FAK_23020  vorD; 2-oxoacid:acceptor oxidoreductase subunit delta [KO:K00176] [EC:1.2.7.3]
FAK_25180  tungsten formylmethanofuran dehydrogenase subunit G [KO:K00176] [EC:1.2.7.3]
FAK_05820  sucD; succinate--CoA ligase [ADP-forming] subunit alpha [KO:K01902] [EC:6.2.1.5]
FAK_18240  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
FAK_21930  succinyl-CoA synthetase subunit alpha [KO:K01902] [EC:6.2.1.5]
FAK_05830  sucC; succinate--CoA ligase [ADP-forming] subunit beta [KO:K01903] [EC:6.2.1.5]
FAK_18230  succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
FAK_21940  succinate--CoA ligase [KO:K01903] [EC:6.2.1.5]
FAK_03530  acetyl-CoA hydrolase [KO:K18118] [EC:2.8.3.18]
FAK_22120  sdhA; fumarate reductase [KO:K00239] [EC:1.3.5.1]
FAK_22100  hypothetical protein [KO:K00240] [EC:1.3.5.1]
FAK_04760  sdhC; heterodisulfide reductase subunit B [KO:K00241]
FAK_22110  sdhC; succinate dehydrogenase 2 membrane subunit SdhC [KO:K00241]
FAK_18270  fdrA; fumarate reductase flavoprotein subunit [KO:K00233] [EC:1.3.5.1 7.1.1.12]
FAK_26250  fdrA; fumarate reductase flavoprotein subunit [KO:K00233] [EC:1.3.5.1 7.1.1.12]
FAK_26260  frdB; fumarate reductase iron-sulfur subunit [KO:K25995] [EC:1.3.5.1 7.1.1.12]
FAK_26240  frdC; fumarate reductase [KO:K25996]
FAK_26220  fumarate hydratase [KO:K01677] [EC:4.2.1.2]
FAK_26230  fumarate hydratase [KO:K01678] [EC:4.2.1.2]
FAK_27180  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
FAK_16440  accC; acetyl-CoA carboxylase biotin carboxylase subunit [KO:K01959] [EC:6.4.1.1]
FAK_26030  pyruvate carboxylase [KO:K01960] [EC:6.4.1.1]
FAK_20410  phosphoenolpyruvate carboxykinase [KO:K01596] [EC:4.1.1.32]
FAK_08360  hypothetical protein [KO:K00627] [EC:2.3.1.12]
FAK_31150  porA; 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha [KO:K00169] [EC:1.2.7.1]
FAK_31160  pyruvate ferredoxin oxidoreductase subunit beta [KO:K00170] [EC:1.2.7.1]
FAK_31130  pyruvate/ketoisovalerate ferredoxin oxidoreductase subunit gamma [KO:K00172] [EC:1.2.7.1]
FAK_17290  hypothetical protein [KO:K00171] [EC:1.2.7.1]
FAK_31140  porD; pyruvate synthase subunit PorD [KO:K00171] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
dmp00010  Glycolysis / Gluconeogenesis
dmp00053  Ascorbate and aldarate metabolism
dmp00061  Fatty acid biosynthesis
dmp00071  Fatty acid degradation
dmp00190  Oxidative phosphorylation
dmp00220  Arginine biosynthesis
dmp00250  Alanine, aspartate and glutamate metabolism
dmp00280  Valine, leucine and isoleucine degradation
dmp00350  Tyrosine metabolism
dmp00470  D-Amino acid metabolism
dmp00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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