KEGG   PATHWAY: dnv00020
Entry
dnv00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Drosophila navojoa
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
dnv00020  Citrate cycle (TCA cycle)
dnv00020

Module
dnv_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:dnv00020]
dnv_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:dnv00020]
dnv_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:dnv00020]
dnv_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:dnv00020]
dnv_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:dnv00020]
Other DBs
GO: 0006099
Organism
Drosophila navojoa [GN:dnv]
Gene
115564142  probable citrate synthase, mitochondrial isoform X1 [KO:K01647] [EC:2.3.3.1]
108654447  ATP-citrate synthase isoform X1 [KO:K01648] [EC:2.3.3.8]
108660203  cytoplasmic aconitate hydratase isoform X1 [KO:K01681] [EC:4.2.1.3]
108660368  probable aconitate hydratase, mitochondrial [KO:K01681] [EC:4.2.1.3]
115562769  probable aconitate hydratase, mitochondrial [KO:K01681] [EC:4.2.1.3]
108652226  isocitrate dehydrogenase [NADP] cytoplasmic isoform X1 [KO:K00031] [EC:1.1.1.42]
108659502  isocitrate dehydrogenase [NAD] subunit beta, mitochondrial [KO:K00030] [EC:1.1.1.41]
108652037  probable isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial [KO:K00030] [EC:1.1.1.41]
108659549  isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial isoform X2 [KO:K00030] [EC:1.1.1.41]
108650416  probable isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial [KO:K00030] [EC:1.1.1.41]
108652993  probable isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial [KO:K00030] [EC:1.1.1.41]
115564420  probable isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial isoform X1 [KO:K00030] [EC:1.1.1.41]
108655259  isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial [KO:K00030] [EC:1.1.1.41]
108651708  2-oxoglutarate dehydrogenase-like, mitochondrial isoform X1 [KO:K00164] [EC:1.2.4.2]
108652042  2-oxoglutarate dehydrogenase, mitochondrial [KO:K00164] [EC:1.2.4.2]
108660266  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial [KO:K00658] [EC:2.3.1.61]
108660267  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial-like [KO:K00658] [EC:2.3.1.61]
108652157  dihydrolipoyl dehydrogenase, mitochondrial [KO:K00382] [EC:1.8.1.4]
108652030  succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial [KO:K01899] [EC:6.2.1.4 6.2.1.5]
108657386  succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial [KO:K01899] [EC:6.2.1.4 6.2.1.5]
108660182  succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial isoform X1 [KO:K01900] [EC:6.2.1.4 6.2.1.5]
108651515  succinate--CoA ligase [GDP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
108653573  succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial [KO:K00234] [EC:1.3.5.1]
108653809  succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial [KO:K00235] [EC:1.3.5.1]
115565571  succinate dehydrogenase [ubiquinone] iron-sulfur subunit-like [KO:K00235] [EC:1.3.5.1]
108651917  uncharacterized protein LOC108651917 [KO:K00236]
108659917  succinate dehydrogenase cytochrome b560 subunit, mitochondrial [KO:K00236]
108658967  succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial [KO:K00237]
108656948  fumarate hydratase, mitochondrial isoform X1 [KO:K01679] [EC:4.2.1.2]
108656959  probable fumarate hydratase, mitochondrial [KO:K01679] [EC:4.2.1.2]
108651555  probable fumarate hydratase, mitochondrial [KO:K01679] [EC:4.2.1.2]
108651556  probable fumarate hydratase, mitochondrial [KO:K01679] [EC:4.2.1.2]
108657985  malate dehydrogenase, cytoplasmic [KO:K00025] [EC:1.1.1.37]
108657276  uncharacterized protein LOC108657276 isoform X1 [KO:K00026] [EC:1.1.1.37]
108659826  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
108654551  malate dehydrogenase, mitochondrial-like [KO:K00026] [EC:1.1.1.37]
108654552  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
108652933  pyruvate carboxylase, mitochondrial-like isoform X1 [KO:K01958] [EC:6.4.1.1]
108652935  pyruvate carboxylase, mitochondrial-like [KO:K01958] [EC:6.4.1.1]
108654790  phosphoenolpyruvate carboxykinase [GTP] [KO:K01596] [EC:4.1.1.32]
108654991  phosphoenolpyruvate carboxykinase [GTP] [KO:K01596] [EC:4.1.1.32]
115564390  pyruvate dehydrogenase E1 component subunit alpha, mitochondrial [KO:K00161] [EC:1.2.4.1]
115564391  pyruvate dehydrogenase E1 component subunit alpha, mitochondrial [KO:K00161] [EC:1.2.4.1]
115562383  pyruvate dehydrogenase E1 component subunit alpha, mitochondrial-like [KO:K00161] [EC:1.2.4.1]
108654537  pyruvate dehydrogenase E1 component subunit beta, mitochondrial isoform X1 [KO:K00162] [EC:1.2.4.1]
108658461  dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial isoform X1 [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
dnv00010  Glycolysis / Gluconeogenesis
dnv00053  Ascorbate and aldarate metabolism
dnv00061  Fatty acid biosynthesis
dnv00062  Fatty acid elongation
dnv00071  Fatty acid degradation
dnv00190  Oxidative phosphorylation
dnv00220  Arginine biosynthesis
dnv00250  Alanine, aspartate and glutamate metabolism
dnv00280  Valine, leucine and isoleucine degradation
dnv00350  Tyrosine metabolism
dnv00470  D-Amino acid metabolism
dnv00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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