KEGG   PATHWAY: don00020
Entry
don00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Marivivens sp. JLT3646
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
don00020  Citrate cycle (TCA cycle)
don00020

Module
don_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:don00020]
don_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:don00020]
don_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:don00020]
don_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:don00020]
don_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:don00020]
Other DBs
GO: 0006099
Organism
Marivivens sp. JLT3646 [GN:don]
Gene
BSK21_07505  citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
BSK21_05995  aconitate hydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
BSK21_03165  isocitrate dehydrogenase (NADP(+)) [KO:K00031] [EC:1.1.1.42]
BSK21_06095  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
BSK21_11470  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
BSK21_11475  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
BSK21_11485  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
BSK21_05030  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
BSK21_11460  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
BSK21_11455  succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
BSK21_11410  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
BSK21_11390  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
BSK21_11420  succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
BSK21_11415  succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
BSK21_07175  fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
BSK21_11450  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
BSK21_04190  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
BSK21_01030  phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
BSK21_07645  pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
BSK21_07650  pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
BSK21_07655  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
don00010  Glycolysis / Gluconeogenesis
don00053  Ascorbate and aldarate metabolism
don00061  Fatty acid biosynthesis
don00071  Fatty acid degradation
don00190  Oxidative phosphorylation
don00220  Arginine biosynthesis
don00250  Alanine, aspartate and glutamate metabolism
don00280  Valine, leucine and isoleucine degradation
don00350  Tyrosine metabolism
don00470  D-Amino acid metabolism
don00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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