KEGG   PATHWAY: dori00020
Entry
dori00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Draconibacterium orientale
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
dori00020  Citrate cycle (TCA cycle)
dori00020

Module
dori_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:dori00020]
dori_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:dori00020]
dori_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:dori00020]
dori_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:dori00020]
Other DBs
GO: 0006099
Organism
Draconibacterium orientale [GN:dori]
Gene
FH5T_13590  type I citrate synthase [KO:K01647] [EC:2.3.3.1]
FH5T_13605  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
FH5T_13595  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
FH5T_13600  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
FH5T_00055  2-oxoglutarate dehydrogenase [KO:K00164] [EC:1.2.4.2]
FH5T_18930  diapophytoene dehydrogenase [KO:K00658] [EC:2.3.1.61]
FH5T_01005  pyridine nucleotide-disulfide oxidoreductase [KO:K00382] [EC:1.8.1.4]
FH5T_12570  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
FH5T_16490  2-ketoisovalerate ferredoxin oxidoreductase [KO:K00174] [EC:1.2.7.3 1.2.7.11]
FH5T_21890  MFS transporter [KO:K00174] [EC:1.2.7.3 1.2.7.11]
FH5T_16495  2-oxoglutarate oxidoreductase [KO:K00175] [EC:1.2.7.3 1.2.7.11]
FH5T_21885  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
FH5T_16500  2-oxoglutarate ferredoxin oxidoreductase subunit gamma [KO:K00177] [EC:1.2.7.3]
FH5T_16485  ferredoxin [KO:K00176] [EC:1.2.7.3]
FH5T_10935  succinyl-CoA synthetase subsunit alpha [KO:K01902] [EC:6.2.1.5]
FH5T_10930  sucC; succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
FH5T_08625  sdhA; succinate dehydrogenase [KO:K00239] [EC:1.3.5.1]
FH5T_08635  succinate dehydrogenase [KO:K00240] [EC:1.3.5.1]
FH5T_08620  succinate dehydrogenase [KO:K00241]
FH5T_21185  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
FH5T_13150  fumC; fumarate hydratase [KO:K01679] [EC:4.2.1.2]
FH5T_10725  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
FH5T_13545  oxaloacetate decarboxylase [KO:K01960] [EC:6.4.1.1]
FH5T_07020  carboxylase [KO:K01960] [EC:6.4.1.1]
FH5T_21270  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
FH5T_01010  dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
FH5T_16570  racemase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
dori00010  Glycolysis / Gluconeogenesis
dori00053  Ascorbate and aldarate metabolism
dori00061  Fatty acid biosynthesis
dori00190  Oxidative phosphorylation
dori00220  Arginine biosynthesis
dori00250  Alanine, aspartate and glutamate metabolism
dori00280  Valine, leucine and isoleucine degradation
dori00350  Tyrosine metabolism
dori00470  D-Amino acid metabolism
dori00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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