KEGG   PATHWAY: dpc03430
Entry
dpc03430                    Pathway                                
Name
Mismatch repair - Dietzia psychralcaliphila
Description
DNA mismatch repair (MMR) is a highly conserved biological pathway that plays a key role in maintaining genomic stability. MMR corrects DNA mismatches generated during DNA replication, thereby preventing mutations from becoming permanent in dividing cells. MMR also suppresses homologous recombination and was recently shown to play a role in DNA damage signaling. Defects in MMR are associated with genome-wide instability, predisposition to certain types of cancer including HNPCC, resistance to certain chemotherapeutic agents, and abnormalities in meiosis and sterility in mammalian systems.
The Escherichia coli MMR pathway has been extensively studied and is well characterized. In E. coli, the mismatch-activated MutS-MutL-ATP complex licenses MutH to incise the nearest unmethylated GATC sequence. UvrD and an exonuclease generate a gap. This gap is filled by pol III and DNA ligase. The GATC sites are then methylated by Dam. Several human MMR proteins have been identified based on their homology to E. coli MMR proteins. These include human homologs of MutS and MutL. Although E. coli MutS and MutL proteins are homodimers, human MutS and MutL homologs are heterodimers. The role of hemimethylated dGATC sites as a signal for strand discrimination is not conserved from E. coli to human. Human MMR is presumed to be nick-directed in vivo, and is thought to discriminate daughter and template strands using a strand-specific nick.
Class
Genetic Information Processing; Replication and repair
Pathway map
dpc03430  Mismatch repair
dpc03430

Other DBs
GO: 0006298
Organism
Dietzia psychralcaliphila [GN:dpc]
Gene
A6048_12050  ATP-dependent DNA helicase PcrA [KO:K03657] [EC:5.6.2.4]
A6048_04805  ATP-dependent DNA helicase [KO:K03657] [EC:5.6.2.4]
A6048_04825  ATP-dependent DNA helicase [KO:K03657] [EC:5.6.2.4]
A6048_10495  exodeoxyribonuclease VII large subunit [KO:K03601] [EC:3.1.11.6]
A6048_10500  exodeoxyribonuclease VII small subunit [KO:K03602] [EC:3.1.11.6]
A6048_05320  single-stranded DNA-binding protein [KO:K03111]
A6048_17190  single-stranded DNA-binding protein [KO:K03111]
A6048_06480  DNA polymerase III subunit alpha [KO:K02337] [EC:2.7.7.7]
A6048_00010  DNA polymerase III subunit beta [KO:K02338] [EC:2.7.7.7]
A6048_01925  DNA polymerase III subunit gamma/tau [KO:K02343] [EC:2.7.7.7]
A6048_05735  DNA polymerase III subunit delta [KO:K02340] [EC:2.7.7.7]
A6048_02510  DNA polymerase III subunit delta' [KO:K02341] [EC:2.7.7.7]
A6048_06230  hypothetical protein [KO:K02342] [EC:2.7.7.7]
A6048_09615  DNA polymerase III subunit epsilon [KO:K02342] [EC:2.7.7.7]
A6048_09720  DNA polymerase III subunit epsilon [KO:K02342] [EC:2.7.7.7]
A6048_01970  DNA polymerase III subunit epsilon [KO:K02342] [EC:2.7.7.7]
A6048_09715  DNA ligase (NAD(+)) LigA [KO:K01972] [EC:6.5.1.2]
Reference
  Authors
Jiricny J.
  Title
The multifaceted mismatch-repair system.
  Journal
Nat Rev Mol Cell Biol 7:335-46 (2006)
DOI:10.1038/nrm1907
Reference
  Authors
Li GM.
  Title
Mechanisms and functions of DNA mismatch repair.
  Journal
Cell Res 18:85-98 (2008)
DOI:10.1038/cr.2007.115
Reference
  Authors
Marti TM, Kunz C, Fleck O.
  Title
DNA mismatch repair and mutation avoidance pathways.
  Journal
J Cell Physiol 191:28-41 (2002)
DOI:10.1002/jcp.10077
Reference
  Authors
Ikejima M, Shimada T.
  Title
[Molecular mechanism of mismatch repair]
  Journal
Tanpakushitsu Kakusan Koso 46:1124-9 (2001)
KO pathway
ko03430   
LinkDB

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