KEGG   PATHWAY: drp00020
Entry
drp00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Devosia rhodophyticola
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
drp00020  Citrate cycle (TCA cycle)
drp00020

Module
drp_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:drp00020]
drp_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:drp00020]
Other DBs
GO: 0006099
Organism
Devosia rhodophyticola [GN:drp]
Gene
PSQ90_07190  citrate synthase [KO:K01647] [EC:2.3.3.1]
PSQ90_16960  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
PSQ90_08680  acnA; aconitate hydratase AcnA [KO:K27802] [EC:4.2.1.3 4.2.1.99]
PSQ90_14330  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
PSQ90_08915  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
PSQ90_08920  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
PSQ90_08940  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
PSQ90_16345  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
PSQ90_08910  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
PSQ90_08865  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
PSQ90_08880  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
PSQ90_08855  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
PSQ90_08860  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
PSQ90_08900  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
PSQ90_09670  pyc; pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
PSQ90_05510  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
PSQ90_16320  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
PSQ90_16330  pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
PSQ90_16335  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
drp00010  Glycolysis / Gluconeogenesis
drp00053  Ascorbate and aldarate metabolism
drp00061  Fatty acid biosynthesis
drp00071  Fatty acid degradation
drp00190  Oxidative phosphorylation
drp00220  Arginine biosynthesis
drp00250  Alanine, aspartate and glutamate metabolism
drp00280  Valine, leucine and isoleucine degradation
drp00350  Tyrosine metabolism
drp00470  D-Amino acid metabolism
drp00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

DBGET integrated database retrieval system