KEGG   PATHWAY: dsv00020
Entry
dsv00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Dermacentor silvarum
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
dsv00020  Citrate cycle (TCA cycle)
dsv00020

Module
dsv_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:dsv00020]
dsv_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:dsv00020]
dsv_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:dsv00020]
dsv_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:dsv00020]
dsv_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:dsv00020]
Other DBs
GO: 0006099
Organism
Dermacentor silvarum [GN:dsv]
Gene
119441672  probable citrate synthase 2, mitochondrial isoform X1 [KO:K01647] [EC:2.3.3.1]
119441599  LOW QUALITY PROTEIN: ATP-citrate synthase-like [KO:K01648] [EC:2.3.3.8]
119453350  probable aconitate hydratase, mitochondrial [KO:K01681] [EC:4.2.1.3]
119455352  cytoplasmic aconitate hydratase-like isoform X3 [KO:K01681] [EC:4.2.1.3]
119441523  isocitrate dehydrogenase [NADP] cytoplasmic [KO:K00031] [EC:1.1.1.42]
119441527  isocitrate dehydrogenase [NADP] cytoplasmic [KO:K00031] [EC:1.1.1.42]
119445018  isocitrate dehydrogenase [NADP] cytoplasmic-like [KO:K00031] [EC:1.1.1.42]
119458149  isocitrate dehydrogenase [NADP] cytoplasmic [KO:K00031] [EC:1.1.1.42]
119459551  isocitrate dehydrogenase [NADP] cytoplasmic [KO:K00031] [EC:1.1.1.42]
119460783  isocitrate dehydrogenase [NADP] cytoplasmic [KO:K00031] [EC:1.1.1.42]
119449204  uncharacterized protein LOC119449204 [KO:K00031] [EC:1.1.1.42]
119434344  isocitrate dehydrogenase [NADP] cytoplasmic-like [KO:K00031] [EC:1.1.1.42]
119435217  isocitrate dehydrogenase [NADP] cytoplasmic [KO:K00031] [EC:1.1.1.42]
119451000  isocitrate dehydrogenase [NADP] cytoplasmic [KO:K00031] [EC:1.1.1.42]
119452347  isocitrate dehydrogenase [NADP] cytoplasmic [KO:K00031] [EC:1.1.1.42]
119442516  probable isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial [KO:K00030] [EC:1.1.1.41]
119459784  probable isocitrate dehydrogenase [NAD] subunit beta, mitochondrial [KO:K00030] [EC:1.1.1.41]
119432918  isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial [KO:K00030] [EC:1.1.1.41]
119461306  isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial-like [KO:K00030] [EC:1.1.1.41]
119434148  isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial [KO:K00030] [EC:1.1.1.41]
119437313  2-oxoglutarate dehydrogenase complex component E1 isoform X1 [KO:K00164] [EC:1.2.4.2]
119442658  2-oxoglutarate dehydrogenase-like, mitochondrial [KO:K00164] [EC:1.2.4.2]
119457876  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial [KO:K00658] [EC:2.3.1.61]
119457879  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial [KO:K00658] [EC:2.3.1.61]
119460694  dihydrolipoyl dehydrogenase, mitochondrial [KO:K00382] [EC:1.8.1.4]
119458781  succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial isoform X1 [KO:K01899] [EC:6.2.1.4 6.2.1.5]
119441388  succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial isoform X1 [KO:K01900] [EC:6.2.1.4 6.2.1.5]
119460590  succinate--CoA ligase [GDP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
119450820  succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial-like [KO:K00234] [EC:1.3.5.1]
119449501  succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial-like [KO:K00235] [EC:1.3.5.1]
119456437  succinate dehydrogenase cytochrome b560 subunit, mitochondrial [KO:K00236]
119435706  succinate dehydrogenase cytochrome b560 subunit, mitochondrial [KO:K00236]
119456140  succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial [KO:K00237]
119458068  fumarate hydratase, mitochondrial [KO:K01679] [EC:4.2.1.2]
119455073  malate dehydrogenase, cytoplasmic [KO:K00025] [EC:1.1.1.37]
119456729  malate dehydrogenase, cytoplasmic [KO:K00025] [EC:1.1.1.37]
119444518  malate dehydrogenase, cytoplasmic-like [KO:K00025] [EC:1.1.1.37]
119458051  malate dehydrogenase, cytoplasmic-like [KO:K00025] [EC:1.1.1.37]
119458052  malate dehydrogenase, cytoplasmic [KO:K00025] [EC:1.1.1.37]
119458255  malate dehydrogenase, cytoplasmic-like [KO:K00025] [EC:1.1.1.37]
119458262  malate dehydrogenase, cytoplasmic [KO:K00025] [EC:1.1.1.37]
119459008  malate dehydrogenase, cytoplasmic-like [KO:K00025] [EC:1.1.1.37]
119445834  malate dehydrogenase, mitochondrial-like [KO:K00026] [EC:1.1.1.37]
119457448  pyruvate carboxylase, mitochondrial isoform X1 [KO:K01958] [EC:6.4.1.1]
119436109  LOW QUALITY PROTEIN: phosphoenolpyruvate carboxykinase, cytosolic [GTP]-like [KO:K01596] [EC:4.1.1.32]
119436112  phosphoenolpyruvate carboxykinase, cytosolic [GTP] [KO:K01596] [EC:4.1.1.32]
119461355  probable pyruvate dehydrogenase E1 component subunit alpha, mitochondrial [KO:K00161] [EC:1.2.4.1]
119446598  LOW QUALITY PROTEIN: pyruvate dehydrogenase E1 component subunit beta, mitochondrial-like [KO:K00162] [EC:1.2.4.1]
119450375  dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial-like [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
dsv00010  Glycolysis / Gluconeogenesis
dsv00053  Ascorbate and aldarate metabolism
dsv00061  Fatty acid biosynthesis
dsv00062  Fatty acid elongation
dsv00071  Fatty acid degradation
dsv00190  Oxidative phosphorylation
dsv00220  Arginine biosynthesis
dsv00250  Alanine, aspartate and glutamate metabolism
dsv00280  Valine, leucine and isoleucine degradation
dsv00350  Tyrosine metabolism
dsv00470  D-Amino acid metabolism
dsv00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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