KEGG   PATHWAY: ead00020
Entry
ead00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Ensifer adhaerens OV14
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
ead00020  Citrate cycle (TCA cycle)
ead00020

Module
ead_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:ead00020]
ead_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:ead00020]
ead_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:ead00020]
ead_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:ead00020]
Other DBs
GO: 0006099
Organism
Ensifer adhaerens OV14 [GN:ead]
Gene
OV14_2589  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
OV14_b0008  Speculative: citrate synthase [KO:K01647] [EC:2.3.3.1]
OV14_b0009  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
OV14_0748  acnA; aconitate hydratase [KO:K01681] [EC:4.2.1.3]
OV14_2971  icd; NADP isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
OV14_0621  sucA; 2-oxoglutarate dehydrogenase, E1 component [KO:K00164] [EC:1.2.4.2]
OV14_0620  sucB2; dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
OV14_0614  lpdA1; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
OV14_0461  lpdA2; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
OV14_2523  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
OV14_0622  sucD; succinyl-CoA synthetase, alpha subunit [KO:K01902] [EC:6.2.1.5]
OV14_0623  sucC; succinyl-CoA synthetase, beta subunit [KO:K01903] [EC:6.2.1.5]
OV14_0628  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
OV14_0627  sdhB; succinate dehydrogenase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
OV14_0630  putative succinate dehydrogenase membrane anchor subunit [KO:K00241]
OV14_0629  putative succinate dehydrogenase hydrophobic membrane anchor protein [KO:K00242]
OV14_3048  fumC; fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
OV14_0624  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
OV14_0804  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
OV14_a1670  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
OV14_0925  pckA; ATP dependent phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
OV14_2518  pdhA2; pyruvate dehydrogenase E1 component alpha subunit [KO:K00161] [EC:1.2.4.1]
OV14_2519  pdhB3; pyruvate dehydrogenase E1 component beta subunit [KO:K00162] [EC:1.2.4.1]
OV14_2520  dihydrolipoyllysine-residue acetyltransferase component of pyruvatedehydrogenase complex [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
ead00010  Glycolysis / Gluconeogenesis
ead00053  Ascorbate and aldarate metabolism
ead00061  Fatty acid biosynthesis
ead00071  Fatty acid degradation
ead00190  Oxidative phosphorylation
ead00220  Arginine biosynthesis
ead00250  Alanine, aspartate and glutamate metabolism
ead00280  Valine, leucine and isoleucine degradation
ead00350  Tyrosine metabolism
ead00470  D-Amino acid metabolism
ead00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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