KEGG   PATHWAY: ean00020
Entry
ean00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Exiguobacterium antarcticum
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
ean00020  Citrate cycle (TCA cycle)
ean00020

Module
ean_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:ean00020]
ean_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:ean00020]
ean_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:ean00020]
ean_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:ean00020]
ean_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:ean00020]
Other DBs
GO: 0006099
Organism
Exiguobacterium antarcticum [GN:ean]
Gene
Eab7_2055  Citrate synthase [KO:K01647] [EC:2.3.3.1]
Eab7_1104  Aconitate hydratase [KO:K01681] [EC:4.2.1.3]
Eab7_2054  icd; Isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
Eab7_1565  odhA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
Eab7_1564  odhB; Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
Eab7_0888  Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
Eab7_1857  Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
Eab7_0358  pdhD; Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
Eab7_1002  pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein [KO:K00174] [EC:1.2.7.3 1.2.7.11]
Eab7_1003  2-oxoglutarate ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
Eab7_1741  sucD; Succinyl-CoA ligase [ADP-forming] subunit alpha [KO:K01902] [EC:6.2.1.5]
Eab7_1742  sucC; Succinyl-CoA ligase [ADP-forming] subunit beta [KO:K01903] [EC:6.2.1.5]
Eab7_2004  sdhA; Succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
Eab7_2003  sdhB; Succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
Eab7_2005  Succinate dehydrogenase/Fumarate reductase transmembrane subunit [KO:K00241]
Eab7_1595  fumC; Fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
Eab7_2053  mdh; Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
Eab7_2812  mqo; Malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
Eab7_1843  Pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
Eab7_2132  pckA; Phosphoenolpyruvate carboxykinase [ATP] [KO:K01610] [EC:4.1.1.49]
Eab7_1860  pdhA; Pyruvate dehydrogenase E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
Eab7_1859  pdhB; Pyruvate dehydrogenase E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
Eab7_1858  pdhC; Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
ean00010  Glycolysis / Gluconeogenesis
ean00053  Ascorbate and aldarate metabolism
ean00061  Fatty acid biosynthesis
ean00071  Fatty acid degradation
ean00190  Oxidative phosphorylation
ean00220  Arginine biosynthesis
ean00250  Alanine, aspartate and glutamate metabolism
ean00280  Valine, leucine and isoleucine degradation
ean00350  Tyrosine metabolism
ean00470  D-Amino acid metabolism
ean00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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