KEGG   PATHWAY: egu00020
Entry
egu00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Elaeis guineensis (African oil palm)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
egu00020  Citrate cycle (TCA cycle)
egu00020

Module
egu_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:egu00020]
egu_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:egu00020]
egu_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:egu00020]
egu_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:egu00020]
egu_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:egu00020]
Other DBs
GO: 0006099
Organism
Elaeis guineensis (African oil palm) [GN:egu]
Gene
105039446  citrate synthase, mitochondrial isoform X1 [KO:K01647] [EC:2.3.3.1]
105040575  citrate synthase, glyoxysomal [KO:K01647] [EC:2.3.3.1]
105041280  citrate synthase, glyoxysomal [KO:K01647] [EC:2.3.3.1]
105048090  citrate synthase, glyoxysomal-like [KO:K01647] [EC:2.3.3.1]
105050474  citrate synthase, mitochondrial [KO:K01647] [EC:2.3.3.1]
105039947  ATP-citrate synthase beta chain protein 1 isoform X1 [KO:K01648] [EC:2.3.3.8]
105040030  ATP-citrate synthase alpha chain protein 2-like isoform X2 [KO:K01648] [EC:2.3.3.8]
105045006  ATP-citrate synthase beta chain protein 1 [KO:K01648] [EC:2.3.3.8]
105057335  ATP-citrate synthase beta chain protein 1-like [KO:K01648] [EC:2.3.3.8]
105059758  ATP-citrate synthase alpha chain protein 3 [KO:K01648] [EC:2.3.3.8]
105042560  aconitate hydratase, cytoplasmic [KO:K01681] [EC:4.2.1.3]
105061192  aconitate hydratase, cytoplasmic-like [KO:K01681] [EC:4.2.1.3]
105051238  putative aconitate hydratase, cytoplasmic [KO:K01681] [EC:4.2.1.3]
105039135  isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
105040690  isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
105047582  isocitrate dehydrogenase [NADP] isoform X1 [KO:K00031] [EC:1.1.1.42]
105058809  isocitrate dehydrogenase [NADP] isoform X1 [KO:K00031] [EC:1.1.1.42]
105038431  isocitrate dehydrogenase [NAD] catalytic subunit 5, mitochondrial [KO:K00030] [EC:1.1.1.41]
105037000  isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial-like [KO:K00030] [EC:1.1.1.41]
105049583  isocitrate dehydrogenase [NAD] regulatory subunit 3, mitochondrial isoform X1 [KO:K00030] [EC:1.1.1.41]
105033741  isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial isoform X1 [KO:K00030] [EC:1.1.1.41]
105051802  isocitrate dehydrogenase [NAD] catalytic subunit 5, mitochondrial-like [KO:K00030] [EC:1.1.1.41]
105052961  isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial isoform X1 [KO:K00030] [EC:1.1.1.41]
105056984  2-oxoglutarate dehydrogenase, mitochondrial-like [KO:K00164] [EC:1.2.4.2]
105044468  2-oxoglutarate dehydrogenase, mitochondrial-like [KO:K00164] [EC:1.2.4.2]
105045720  2-oxoglutarate dehydrogenase, mitochondrial [KO:K00164] [EC:1.2.4.2]
105051043  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, mitochondrial [KO:K00658] [EC:2.3.1.61]
105061406  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 1, mitochondrial isoform X1 [KO:K00658] [EC:2.3.1.61]
105034968  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 1, mitochondrial-like [KO:K00658] [EC:2.3.1.61]
105039925  dihydrolipoyl dehydrogenase 2, chloroplastic [KO:K00382] [EC:1.8.1.4]
105040020  dihydrolipoyl dehydrogenase 1, mitochondrial-like [KO:K00382] [EC:1.8.1.4]
105059764  dihydrolipoyl dehydrogenase, mitochondrial-like [KO:K00382] [EC:1.8.1.4]
105054610  succinate--CoA ligase [ADP-forming] subunit alpha, mitochondrial [KO:K01899] [EC:6.2.1.4 6.2.1.5]
105046449  succinate--CoA ligase [ADP-forming] subunit alpha-2, mitochondrial [KO:K01899] [EC:6.2.1.4 6.2.1.5]
105054469  succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
105044231  succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial-like [KO:K01900] [EC:6.2.1.4 6.2.1.5]
105060109  succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial [KO:K00234] [EC:1.3.5.1]
105060729  succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial isoform X1 [KO:K00234] [EC:1.3.5.1]
105049571  succinate dehydrogenase [ubiquinone] iron-sulfur subunit 1, mitochondrial [KO:K00235] [EC:1.3.5.1]
105051324  succinate dehydrogenase [ubiquinone] iron-sulfur subunit 1, mitochondrial-like [KO:K00235] [EC:1.3.5.1]
105056842  succinate dehydrogenase [ubiquinone] iron-sulfur subunit 3, mitochondrial [KO:K00235] [EC:1.3.5.1]
105052990  succinate dehydrogenase [ubiquinone] iron-sulfur subunit 1, mitochondrial [KO:K00235] [EC:1.3.5.1]
105046915  succinate dehydrogenase subunit 3-2, mitochondrial-like [KO:K00236]
105051662  succinate dehydrogenase subunit 3-2, mitochondrial-like [KO:K00236]
105045533  succinate dehydrogenase subunit 4, mitochondrial-like [KO:K25801]
105052741  succinate dehydrogenase subunit 4, mitochondrial [KO:K25801]
105057440  fumarate hydratase 1, mitochondrial [KO:K01679] [EC:4.2.1.2]
105044322  malate dehydrogenase [KO:K00025] [EC:1.1.1.37]
105055679  malate dehydrogenase, cytoplasmic [KO:K00025] [EC:1.1.1.37]
105043662  malate dehydrogenase isoform X2 [KO:K00025] [EC:1.1.1.37]
105038457  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
105040661  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
105041737  malate dehydrogenase, chloroplastic [KO:K00026] [EC:1.1.1.37]
105060089  malate dehydrogenase, glyoxysomal [KO:K00026] [EC:1.1.1.37]
105058543  malate dehydrogenase, chloroplastic-like [KO:K00026] [EC:1.1.1.37]
105061005  malate dehydrogenase, glyoxysomal [KO:K00026] [EC:1.1.1.37]
105055912  malate dehydrogenase, glyoxysomal isoform X1 [KO:K00026] [EC:1.1.1.37]
105056603  malate dehydrogenase, chloroplastic [KO:K00026] [EC:1.1.1.37]
105034557  LOW QUALITY PROTEIN: phosphoenolpyruvate carboxykinase [ATP]-like [KO:K01610] [EC:4.1.1.49]
105054530  phosphoenolpyruvate carboxykinase [ATP] [KO:K01610] [EC:4.1.1.49]
105039117  pyruvate dehydrogenase E1 component subunit alpha-1, mitochondrial [KO:K00161] [EC:1.2.4.1]
105050071  pyruvate dehydrogenase E1 component subunit alpha-1, mitochondrial-like isoform X1 [KO:K00161] [EC:1.2.4.1]
105059287  LOW QUALITY PROTEIN: pyruvate dehydrogenase E1 component subunit alpha-3, chloroplastic [KO:K00161] [EC:1.2.4.1]
105050691  pyruvate dehydrogenase E1 component subunit alpha-1, mitochondrial isoform X1 [KO:K00161] [EC:1.2.4.1]
105034723  pyruvate dehydrogenase E1 component subunit beta isoform X2 [KO:K00162] [EC:1.2.4.1]
105034969  pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial-like [KO:K00162] [EC:1.2.4.1]
105059550  pyruvate dehydrogenase E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
105061405  pyruvate dehydrogenase E1 component subunit beta-2, mitochondrial [KO:K00162] [EC:1.2.4.1]
105035588  dihydrolipoyllysine-residue acetyltransferase component 4 of pyruvate dehydrogenase complex, chloroplastic [KO:K00627] [EC:2.3.1.12]
105038468  dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex, chloroplastic-like [KO:K00627] [EC:2.3.1.12]
105046063  LOW QUALITY PROTEIN: dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex, mitochondrial-like [KO:K00627] [EC:2.3.1.12]
105059487  dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex, mitochondrial-like [KO:K00627] [EC:2.3.1.12]
105054728  dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex, mitochondrial [KO:K00627] [EC:2.3.1.12]
105051780  LOW QUALITY PROTEIN: dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex, chloroplastic [KO:K00627] [EC:2.3.1.12]
105052355  dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex, mitochondrial [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
egu00010  Glycolysis / Gluconeogenesis
egu00053  Ascorbate and aldarate metabolism
egu00061  Fatty acid biosynthesis
egu00062  Fatty acid elongation
egu00071  Fatty acid degradation
egu00190  Oxidative phosphorylation
egu00220  Arginine biosynthesis
egu00250  Alanine, aspartate and glutamate metabolism
egu00280  Valine, leucine and isoleucine degradation
egu00350  Tyrosine metabolism
egu00470  D-Amino acid metabolism
egu00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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