KEGG   PATHWAY: eke00020
Entry
eke00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Epidermidibacterium keratini
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
eke00020  Citrate cycle (TCA cycle)
eke00020

Module
eke_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:eke00020]
eke_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:eke00020]
eke_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:eke00020]
eke_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:eke00020]
eke_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:eke00020]
Other DBs
GO: 0006099
Organism
Epidermidibacterium keratini [GN:eke]
Gene
EK0264_14985  citrate synthase [KO:K01647] [EC:2.3.3.1]
EK0264_16040  helix-turn-helix domain-containing protein [KO:K01647] [EC:2.3.3.1]
EK0264_16045  citrate synthase/methylcitrate synthase [KO:K01647] [EC:2.3.3.1]
EK0264_18710  acnA; aconitate hydratase AcnA [KO:K27802] [EC:4.2.1.3 4.2.1.99]
EK0264_14965  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
EK0264_16200  multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
EK0264_02340  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
EK0264_05205  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
EK0264_05210  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
EK0264_14915  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
EK0264_14910  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
EK0264_05180  sdhA; succinate dehydrogenase (quinone) flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
EK0264_05185  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
EK0264_05175  succinate dehydrogenase [KO:K00241]
EK0264_08510  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
EK0264_16420  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
EK0264_15995  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
EK0264_08120  phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
EK0264_02540  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
EK0264_09550  pyruvate dehydrogenase [KO:K00163] [EC:1.2.4.1]
EK0264_17365  pyruvate dehydrogenase [KO:K00163] [EC:1.2.4.1]
EK0264_02235  sucB; 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
eke00010  Glycolysis / Gluconeogenesis
eke00053  Ascorbate and aldarate metabolism
eke00061  Fatty acid biosynthesis
eke00071  Fatty acid degradation
eke00190  Oxidative phosphorylation
eke00220  Arginine biosynthesis
eke00250  Alanine, aspartate and glutamate metabolism
eke00280  Valine, leucine and isoleucine degradation
eke00350  Tyrosine metabolism
eke00470  D-Amino acid metabolism
eke00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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